Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. Klaas Vandepoele

Faculty of Sciences > Department of Plant Biotechnology and Bioinformatics

ORCID iD: 0000-0003-4790-2725

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- Book Chapter
MINI-EX version 2 : cell-type-specific gene regulatory network inference using an integrative single-cell transcriptomics approach

Jasper Staut (UGent) , Nicolás Manosalva Pérez, Thomas Depuydt, Klaas Vandepoele (UGent) and Svitlana Lukicheva (UGent)

(2026) Plant transcription factors : methods and protocols. In Methods in Molecular Biology 2985. p.159-191
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- Journal Article
- A1
- open access
Ready for battle : histone modifications shape rice intergenerational memory to protect against nematode attack

Mohammad Atighi Quchan Atigh, Aniko Meijer, Tim De Meyer (UGent) , Klaas Vandepoele (UGent) and Tina Kyndt (UGent)

(2026) JOURNAL OF EXPERIMENTAL BOTANY.
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- Journal Article
- A1
- open access
JASPAR 2026 : expansion of transcription factor binding profiles and integration of deep learning models

Damla Ovek Baydar, Ieva Rauluseviciute, Dina R Aronsen, Romain Blanc-Mathieu, Ine Bonthuis, Herman De Beukelaer (UGent) , Katalin Ferenc, Alice Jegou, Vipin Kumar, Roza Berhanu Lemma, et al.

(2026) NUCLEIC ACIDS RESEARCH. 54(D1). p.D184-D193
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- Journal Article
- A1
- open access
Conserved genetic markers reveal widespread diatom sexual reproduction in the global ocean

Gust Bilcke (UGent) , Lucia Campese, Rossella Annunziata, Luz Amadei Martínez (UGent) , Camilla Borgonuovo, Nadine Rijsdijk (UGent) , Peter Chaerle (UGent) , Koen Van den Berge (UGent) , Sofie D'hondt (UGent) , Daniele Iudicone, et al.

(2025) NATURE COMMUNICATIONS. 16(1).
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- Miscellaneous
- open access
Integrative gene regulatory networks and machine learning unveil the functions of novel maize regulators

Klaas Vandepoele (UGent)

(2025) MOLECULAR PLANT. 18(12). p.2057-2059
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- Journal Article
- A1
- open access
Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits

Perla Novais de Oliveira, Leonardo Perez de Souza, Pedro Boscariol Ferreira, Jean Phillippe Mauxion, Luis Felipe Correa da Silva, Ana Isabela Chang, Marina de Lyra Soriano Saleme, Feng Zhu, Sara Selma Garcia (UGent) , Herman De Beukelaer (UGent) , et al.

(2025) PLANT BIOTECHNOLOGY JOURNAL. 23(9). p.3540-3560
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- Journal Article
- A1
- open access
A map of integrated cis-regulatory elements enhances gene regulatory analysis in maize

Jasper Staut (UGent) , Nicolás Manosalva Pérez, Andres Matres Ferrando, Indeewari Dissanayake (UGent) and Klaas Vandepoele (UGent)

(2025) PLANT COMMUNICATIONS. 6(7).
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- Journal Article
- A1
- open access
DiatOmicBase : a versatile gene‐centered platform for mining functional omics data in diatom research

Emilie Villar, Nathanaël Zweig, Pierre Vincens, Helena Cruz de Carvalho, Carole Duchene, Shun Liu, Raphael Monteil, Richard G. Dorrell, Michele Fabris, Klaas Vandepoele (UGent) , et al.

(2025) PLANT JOURNAL. 121(6).
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- Journal Article
- A1
- open access
CRISPR/Cas9 editing of p-COUMAROYL-CoA:MONOLIGNOL TRANSFERASE 1 in maize alters phenolic metabolism, lignin structure, and lignin-first biomass processing

Dyoni M. Oliveira (UGent) , Marina de Lyra Soriano Saleme, Rebecca A. Smith, Thijs Vangeel, Marcelo de Freitas Lima (UGent) , Alexandra Alvarenga Chanoca (UGent) , Thatiane Rodrigues Mota (UGent) , Yasmine Vanhevel (UGent) , Griet Coussens (UGent) , Korneel Van Aelst, et al.

(2025) TRENDS IN BIOTECHNOLOGY. 43(5). p.1166-1195
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- Journal Article
- A1
- open access
A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators

Yuji Ke (UGent) , Vincent Pujol (UGent) , Jasper Staut (UGent) , Lotte Pollaris (UGent) , Ruth Seurinck (UGent) , Thomas Eekhout (UGent) , Carolin Seyfferth (UGent) , Maite Saura Sanchez (UGent) , Michiel Van Bel (UGent) , Marnik Vuylsteke (UGent) , et al.

(2025) CELL REPORTS. 44(2).

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