Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. Klaas Vandepoele

Faculty of Sciences > Department of Plant Biotechnology and Bioinformatics

ORCID iD: 0000-0003-4790-2725

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- Journal Article
- open access
MINI‐AC: inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva Pérez (UGent) , Camilla Ferrari (UGent) , Julia Engelhorn, Thomas Depuydt (UGent) , Hilde Nelissen (UGent) , Thomas Hartwig and Klaas Vandepoele (UGent)

(2023) The Plant Journal.
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- Book Editor
Plant gene regulatory networks : methods and protocols

Kerstin Kaufmann and Klaas Vandepoele (UGent)

(2023) In Methods in Molecular Biology 2698.
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- Book Chapter
Characterization of gene regulatory networks in plants using new methods and data types

Klaas Vandepoele (UGent) and Kerstin Kaufmann

(2023) Plant gene regulatory networks : methods and protocols. In Methods in Molecular Biology 2698. p.1-11
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- Book Chapter
Prediction of transcription factor regulators and gene regulatory networks in tomato using binding site information

Nicolás Manosalva Pérez (UGent) and Klaas Vandepoele (UGent)

(2023) Plant gene regulatory networks : methods and protocols. In Methods in Molecular Biology 2698. p.323-349
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- Journal Article
- A1
- open access
Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation

Jirina Zackova Suchanova, Gust Bilcke (UGent) , Beata Romanowska, Ali Fatlawi, Martin Pippel, Alastair Skeffington, Michael Schroeder, Wim Vyverman (UGent) , Klaas Vandepoele (UGent) , Nils Kröger, et al.

(2023) NEW PHYTOLOGIST. 240(2). p.770-783
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- open access
Predicting transcriptional responses to heat and drought stress from genomic features using a machine learning approach in rice

Dajo Smet (UGent) , Helder Opdebeeck and Klaas Vandepoele (UGent)

(2023) FRONTIERS IN PLANT SCIENCE. 14.
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- open access
Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots

Li Liu (UGent) , Michel Heidecker, Thomas Depuydt (UGent) , Nicolás Manosalva Pérez (UGent) , Martin Crespi, Thomas Blein and Klaas Vandepoele (UGent)

(2023) PLANT PHYSIOLOGY. 193(3). p.1933-1953
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- open access
Distinctive and complementary roles of E2F transcription factors during plant replication stress responses

Maherun Nisa, Thomas Eekhout (UGent) , Clara Bergis, José Antonio Pedroza-Garcia (UGent) , Xiaoning He, Christelle Mazubert, Ilse Vercauteren (UGent) , Toon Cools (UGent) , Rim Brik-Chaouche, Jeannine Drouin-Wahbi, et al.

(2023) MOLECULAR PLANT. 16(6). p.1269-1282
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Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses

Aniko Meijer (UGent) , Mohammad Atighi Quchan Atigh, Kristof Demeestere (UGent) , Tim De Meyer (UGent) , Klaas Vandepoele (UGent) and Tina Kyndt (UGent)

(2023) PLANT PHYSIOLOGY. 193(3). p.2071-2085
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- open access
A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis

Trang Hieu Nguyen (UGent) , Louis Thiers, Alex Van Moerkercke (UGent) , Yuechen Bai, Patricia Fernandez Calvo (UGent) , Max Minne (UGent) , Thomas Depuydt (UGent) , Maite Colinas Martinez (UGent) , Kevin Verstaen (UGent) , Gert Van Isterdael (UGent) , et al.

(2023) NATURE PLANTS. 9(6). p.926-937

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