prof. dr. ir. Vanessa Vermeirssen

Journal Article
A1
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How negative sampling shapes the performance of transcription factor binding site prediction models

Natan Tourne (UGent) , Gaetan De Waele (UGent) , Vanessa Vermeirssen (UGent) and Willem Waegeman (UGent)

(2026) BIOINFORMATICS. 42(2).

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Repurposing itraconazole and pyrimethamine with temozolomide as a combinatorial treatment for glioblastoma

Thibault Lootens (UGent) , Jelle Vandersteene (UGent) , Harry Pinson (UGent) , Sam Ernst (UGent) , Tom Boterberg (UGent) , Vanessa Vermeirssen (UGent) , Olivier De Wever (UGent) , Frederik De Smet and Robrecht Raedt (UGent)

(2025) OncoPoint Symposium, 11th, Abstracts.

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A human-specific, concerted repression of microcephaly genes contributes to radiation-induced growth defects in cortical organoids

Jessica Honorato Ribeiro (UGent) , Emre Etlioglu, Jasmine Buset, Ann Janssen, Hanne Puype (UGent) , Lisa Berden, Andre Claude Mbouombouo Mfossa, Winnok H. De Vos, Vanessa Vermeirssen (UGent) , Sarah Baatout (UGent) , et al.

(2025) ISCIENCE. 28(2).

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Proteomics dataset of lysolecithin-induced demyelinated lesions in corpus callosum of Lewis rats, treated with Vagus nerve stimulation or sham treatment

Helen Bachmann (UGent) , Boris Vandemoortele (UGent) , Vanessa Vermeirssen (UGent) , Evelien Carrette (UGent) , Kristl Vonck (UGent) , Paul Boon (UGent) , Robrecht Raedt (UGent) and Guy Laureys (UGent)

(2024) DATA IN BRIEF. 57.

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Repurposing itraconazole and pyrimethamine with temozolomide as a combinatorial treatment for glioblastoma

Thibault Lootens (UGent) , Jelle Vandersteene (UGent) , Harry Pinson (UGent) , Tom Boterberg (UGent) , Vanessa Vermeirssen (UGent) , Olivier De Wever (UGent) , Frederik De Smet and Robrecht Raedt (UGent)

(2024) NEURO-ONCOLOGY. In Neuro-Oncology 26(Suppl. 5). p.v135-v135

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NBAtlas : a harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors

Noah Bonine (UGent) , Vittorio Zanzani (UGent) , Annelies Van Hemelryk (UGent) , Bavo Vanneste (UGent) , Christian Zwicker (UGent) , Tinne THONE (UGent) , Sofie Roelandt (UGent) , Sarah-Lee Bekaert (UGent) , Jan Koster, Isabelle Janoueix-Lerosey, et al.

(2024) CELL REPORTS. 43(10).

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A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data

Jens Uwe Loers (UGent) and Vanessa Vermeirssen (UGent)

(2024) BRIEFINGS IN BIOINFORMATICS. 25(5).

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Vagus nerve stimulation enhances remyelination and decreases innate neuroinflammation in lysolecithin-induced demyelination

Helen Bachmann (UGent) , Boris Vandemoortele (UGent) , Vanessa Vermeirssen (UGent) , Evelien Carrette (UGent) , Kristl Vonck (UGent) , Paul Boon (UGent) , Robrecht Raedt (UGent) and Guy Laureys (UGent)

(2024) BRAIN STIMULATION. 17(3). p.575-587

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Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma

Stéphane Van Haver, Yujie Fan, Sarah-Lee Bekaert (UGent) , Celine Everaert (UGent) , Wouter Van Loocke (UGent) , Vittorio Zanzani (UGent) , Joke Deschildre, Ines Fernandez Maestre, Adrianna Amaro, Vanessa Vermeirssen (UGent) , et al.

(2024) ISCIENCE. 27(1).

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Evaluation of single-sample network inference methods for precision oncology

Joke Deschildre, Boris Vandemoortele (UGent) , Jens Uwe Loers (UGent) , Katleen De Preter (UGent) and Vanessa Vermeirssen (UGent)

(2024) NPJ SYSTEMS BIOLOGY AND APPLICATIONS. 10(1).

Academic Bibliography

prof. dr. ir. Vanessa Vermeirssen

How negative sampling shapes the performance of transcription factor binding site prediction models

Repurposing itraconazole and pyrimethamine with temozolomide as a combinatorial treatment for glioblastoma

A human-specific, concerted repression of microcephaly genes contributes to radiation-induced growth defects in cortical organoids

Proteomics dataset of lysolecithin-induced demyelinated lesions in corpus callosum of Lewis rats, treated with Vagus nerve stimulation or sham treatment

Repurposing itraconazole and pyrimethamine with temozolomide as a combinatorial treatment for glioblastoma

NBAtlas : a harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors

A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data

Vagus nerve stimulation enhances remyelination and decreases innate neuroinflammation in lysolecithin-induced demyelination

Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma

Evaluation of single-sample network inference methods for precision oncology

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