Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. ir. Gerben Menschaert

Faculty of Bioscience Engineering > Department of Data analysis and mathematical modelling

ORCID iD: 0000-0002-7575-2085

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- Journal Article
- A1
- open access
Dual lipid modulation overcomes ferroptosis resistance in high-risk neuroblastoma

Ine Koeken, Magali Walravens, Roberto Fernández-Acosta, Ruben Van Hoyweghen, Iuliana Vintea (UGent) , Yingyi Kong, Bianka Golba, Jonas Dehairs, Ali Talebi, Johannes V. Swinnen, et al.

(2026) CELL DEATH AND DIFFERENTIATION. 33(5). p.903-913
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Translon : a single term for translated regions

Michał I. Świrski, Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins, Michal Bassani-Sternberg, Marla J. Berry, Stefano Biffo, Kathleen Boris-Lawrie, et al.

(2025) NATURE METHODS. 22(10). p.2002-2006
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An expanded reference catalog of translated open reading frames for biomedical research

Sonia Chothani, Jorge Ruiz-Orera, Jack A. S. Tierney, Jim Clauwaert, Eric W Deutsch, M. Mar Alba, Julie L. Aspden, Pavel V. Baranov, Ariel Alejandro Bazzini, Elspeth A. Bruford, et al.

(2025) bioRxiv.
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Reannotation of cancer mutations based on expressed RNA transcripts reveals functional non-coding mutations in melanoma

Daniele Pepe, Xander Janssens, Kalina Timcheva, Grecia M. Marron-Linares, Benno Verbelen, Vasileios Konstantakos, Dylan De Groote, Jolien De Bie, Amber Verhasselt, Barbara Dewaele, et al.

(2025) AMERICAN JOURNAL OF HUMAN GENETICS. 112(6). p.1447-1467
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Translatome and translation dynamics analysis of a RiboCancer cell line panel reveals that leukemia-associated Rps15 mutations rewire translation through codon-specific tRNA accommodation defects

Anaïs Astier, Marino Caruso, Stijn Vereecke, Paulo E. Santo, Coralie Capron, Carine Froment, Dana Rinaldi, David Cabrerizo Granados, Marine Leclercq, Jonathan Royaert, et al.

(2025) bioRxiv.
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- Miscellaneous
A systematic assessment of single-cell language model configurations

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2025) bioRxiv.
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Nanopore sequencing enables tissue-of-origin and pathogen detection in plasma cell-free DNA from critically ill patients

Cyril Willemart, Mojca Strazisar, Tim De Pooter, Tom Stroobants, Thomas Demuyser, Philippe Jorens, Eric Hoste (UGent) , Gerben Menschaert (UGent) and Tom Vanden Berghe (UGent)

(2025) CELL DEATH DISCOVERY. 11(1).
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- A1
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Pre-trained MALDI transformers improve MALDI-TOF MS-based prediction

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) , Peter Vandamme (UGent) and Willem Waegeman (UGent)

(2025) COMPUTERS IN BIOLOGY AND MEDICINE. 186.
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High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

Eric W Deutsch, Leron W Kok, Jonathan M Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun, Jennifer G Abelin, M Mar Alba, Julie L Aspden, Ariel A Bazzini, et al.

(2024) bioRxiv.
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Deep learning decodes new sites of RNA translation in medulloblastoma

Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and John Prensner

(2024) NEURO-ONCOLOGY. 26(Suppl. 4).

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