Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. ir. Gerben Menschaert

Faculty of Bioscience Engineering > Department of Data analysis and mathematical modelling

ORCID iD: 0000-0002-7575-2085

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- Miscellaneous
- open access
Editorial : sORF encoded peptides in health and disease

Joseph Rothnagel, Harsha Gowda and Gerben Menschaert (UGent)

(2022) FRONTIERS IN GENETICS. 13.
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Standardized annotation of translated open reading frames

Jonathan M. Mudge, Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Ferriol Calvet, Irwin Jungreis, Jose Manuel Gonzalez, Michele Magrane, Thomas F. Martinez, Jana Felicitas Schulz, et al.

(2022) NATURE BIOTECHNOLOGY. 40(7). p.994-999
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- Journal Article
- A1
- open access
CpG transformer for imputation of single-cell methylomes

Gaetan De Waele (UGent) , Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2022) BIOINFORMATICS. 38(3). p.597-603
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- Conference Paper
- C3
- open access
Role of coelomocytes and immunity in axenic dietary restriction

Lucas Mergan, Brecht Driesschaert, Elisabeth Dens, Elke Vandewyer, Louis Coussement (UGent) , Gerben Menschaert (UGent) , Bart Braeckman (UGent) and Liesbet Temmerman

(2021) International C. elegans Conference, 23rd, Abstracts.
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Downregulation of the FTO m(6)A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors

Jana Jeschke, Evelyne Collignon, Clemence Al Wardi, Mohammad Krayem, Martin Bizet, Yan Jia, Soizic Garaud, Zena Wimana, Emilie Calonne, Bouchra Hassabi, et al.

(2021) NATURE CANCER. 2(6). p.611-628
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- Journal Article
- A1
- open access
Identification of non-canonical translation products in C. elegans using tandem mass spectrometry

Bhavesh S. Parmar, Marlies Peeters (UGent) , Kurt Boonen, Ellie C. Clark, Geert Baggerman, Gerben Menschaert (UGent) and Liesbet Temmerman

(2021) FRONTIERS IN GENETICS. 12.
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- Journal Article
- A1
- open access
Ion mobility coupled to a time-of-flight mass analyzer combined with fragment intensity predictions improves identification of classical bioactive peptides and small open reading frame-encoded peptides

Marlies Peeters (UGent) , Geert Baggerman, Ralf Gabriels (UGent) , Elise Pepermans, Gerben Menschaert (UGent) and Kurt Boonen

(2021) FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 9.
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- Journal Article
- A1
- open access
Explainability in transformer models for functional genomics

Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2021) BRIEFINGS IN BIOINFORMATICS. 22(5).
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- Journal Article
- A1
- open access
Spectral prediction features as a solution for the search space size problem in proteogenomics

Steven Verbruggen (UGent) , Siegfried Gessulat, Ralf Gabriels (UGent) , Anna Matsaroki (UGent) , Hendrik Van de Voorde (UGent) , Bernhard Kuster, Sven Degroeve (UGent) , Lennart Martens (UGent) , Wim Van Criekinge (UGent) , Mathias Wilhelm, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.
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- Journal Article
- A1
- open access
Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation

Jie Lan, Nicholas Rajan, Martin Bizet, Audrey Penning, Nitesh K. Singh, Diana Guallar, Emilie Calonne, Andrea Li Greci, Elise Bonvin, Rachel Deplus, et al.

(2020) NATURE COMMUNICATIONS. 11(1).

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