Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. ir. Jo Vandesompele

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0001-6274-0184

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Standardized digital PCR assay validation using PCR-ValiPal, demonstrated in cross-platform quantification of bovine papilloma virus

David Gleerup (UGent) , Matthijs Vynck (UGent) , Lien Gysens, Cindy De Baere (UGent) , Wim Trypsteen (UGent) , Jo Vandesompele (UGent) , Olivier Thas (UGent) , Ann Martens (UGent) , Maarten Haspeslagh (UGent) and Ward De Spiegelaere (UGent)

(2026) ANALYTICA CHIMICA ACTA. 1394.
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- Conference Paper
The development of a custom spatial transcriptomics platform to study cellular heterogeneity induced by targeted therapies in neuroblastoma

Hanne Van Droogenbroeck (UGent) , Franco Alexander Poma Soto (UGent) , Brecht Soulliaert (UGent) , Mark Somoza [missing], Maya Gridhar, Charlotte Scott (UGent) , Robrecht Raedt (UGent) , Bram De Wilde (UGent) , Tom Van Maerken (UGent) , Pieter Mestdagh (UGent) , et al.

(2025)
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- Conference Paper
The development of a custom spatial transcriptomics platform to study cellular heterogeneity induced by targeted therapies in neuroblastoma

Franco Alexander Poma Soto (UGent) , Brecht Soulliaert (UGent) , Mark Somoza [missing], Maya Gridhar [missing], Charlotte Scott (UGent) , Robrecht Raedt (UGent) , Bram De Wilde (UGent) , Tom Van Maerken (UGent) , Pieter Mestdagh (UGent) , Jo Vandesompele (UGent) , et al.

(2025)
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- Conference Paper
- C3
Development of a digital PCR TERT/TERRA quantification assay in neuroblastoma

Pinar Safari, Kimberly Verniers (UGent) , Lisa Werr, Christoph Bartenhagen, Nickolas Johns Ramirez (UGent) , Anneleen Decock (UGent) , Bram De Wilde (UGent) , Matthias Fischer and Jo Vandesompele (UGent)

(2025) Advances in Neuroblastoma Research (ANR) Meeting 2025, Abstracts.
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- Miscellaneous
Deconvoluting fiber type proportions from human skeletal muscle transcriptomics and proteomics data using FibeRtypeR

Thibaux Van der Stede (UGent) , Roger Moreno-Justicia, Freek Van de Casteele (UGent) , Eline Lievens (UGent) , Alexia Van de Loock (UGent) , Jonas Vandecauter (UGent) , Peter Merseburger, Jimmy Van den Eynden (UGent) , Delphi Van Haver (UGent) , An Staes (UGent) , et al.

(2025) BioRxiv.
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- Miscellaneous
Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids (Apr, 10.1038/s41596-025-01150-y, 2025)

Eva Blondeel (UGent) , Sam Ernst (UGent) , Felix De Vuyst (UGent) , Ákos Diósdi, Cláudio Pinheiro (UGent) , Diogo Miguel Monteiro Estêvão (UGent) , Pekka Rappu, Robin Boiy (UGent) , Sandor Dedeyne (UGent) , Ligia Craciun, et al.

(2025) NATURE PROTOCOLS.
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- Journal Article
- A1
- open access
Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids

Eva Blondeel (UGent) , Sam Ernst (UGent) , Felix De Vuyst (UGent) , Ákos Diósdi, Cláudio Pinheiro (UGent) , Diogo Estêvão, Pekka Rappu, Robin Boiy (UGent) , Sandor Dedeyne (UGent) , Ligia Craciun, et al.

(2025) NATURE PROTOCOLS. 20(10). p.2899-2941
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- Journal Article
- A1
- open access
Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling

The exRNAQC Consortium, Jasper Anckaert (UGent) , Francisco Avila Cobos (UGent) , Anneleen Decock (UGent) , Philippe Decruyenaere (UGent) , Jill Deleu (UGent) , Katleen De Preter (UGent) , Olivier De Wever (UGent) , Jilke De Wilde (UGent) , Bert Dhondt, et al.

(2025) NATURE COMMUNICATIONS. 16(1).
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- Journal Article
- A2
- open access
Polytect : an automatic clustering and labeling method for multicolor digital PCR data

Yao Chen (UGent) , Ward De Spiegelaere (UGent) , Wim Trypsteen (UGent) , Jo Vandesompele (UGent) , Gertjan Wils (UGent) , David Gleerup (UGent) , Antoon Lievens (UGent) , Olivier Thas (UGent) and Matthijs Vynck (UGent)

(2025) NAR GENOMICS AND BIOINFORMATICS. 7(1).
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- Book Chapter
Digital PCR-based gene expression analysis using a highly multiplexed assay with universal detection probes to study induced pluripotent stem cell differentiation into cranial neural crest cells

Gertjan Wils (UGent) , Lisa Hamerlinck (UGent) , Wim Trypsteen (UGent) , Charlotte Van Den Eeckhaut, Jonathan Weiss, Afif Abdel Nour, Sarah Vergult (UGent) and Jo Vandesompele (UGent)

(2025) Gene expression analysis : methods and protocols. In Methods in molecular biology (MIMB) 2880. p.17-47

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