Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. ir. Luca Renders

ORCID iD: 0000-0002-2244-1427

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- A1
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Columba : fast approximate pattern matching with optimized search schemes

Luca Renders (UGent) , Lore Depuydt (UGent) , Travis Gagie and Jan Fostier (UGent)

(2025) BIOINFORMATICS. 41(12).
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- Book Chapter
- open access
Search schemes for approximate pattern matching : an overview

Lore Depuydt (UGent) , Jan Fostier (UGent) , Simon Gottlieb, Gregory Kucherov, Knut Reinert and Luca Renders (UGent)

(2025) The Expanding World of Compressed Data : A Festschrift for Giovanni Manzini's 60th Birthday. In Open Access Series in Informatics (OASIcs) 131.
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- Journal Article
- A1
- open access
b-move : faster lossless approximate pattern matching in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, Travis Gagie and Jan Fostier (UGent)

(2025) ALGORITHMS FOR MOLECULAR BIOLOGY. 20(1).
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- PhD Thesis
Approximate sequence alignment using search schemes

Luca Renders (UGent)

(2025)
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- Journal Article
- A1
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Lossless approximate pattern matching : automated design of efficient search schemes

Luca Renders (UGent) , Lore Depuydt (UGent) , Sven Rahmann and Jan Fostier (UGent)

(2024) JOURNAL OF COMPUTATIONAL BIOLOGY. 31(10). p.975-989
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- Conference Paper
- P1
- open access
B-move : faster bidirectional character extensions in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, T. Gagie and Jan Fostier (UGent)

(2024) 24TH INTERNATIONAL WORKSHOP ON ALGORITHMS IN BIOINFORMATICS, WABI 2024. In Leibniz International Proceedings in Informatics (LIPIcs) 312. p.1-18
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- Conference Paper
- P1
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Automated design of efficient search schemes for lossless approximate pattern matching

Luca Renders (UGent) , Lore Depuydt (UGent) , Sven Rahmann and Jan Fostier (UGent)

(2024) RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, RECOMB 2024. In Lecture Notes in Computer Science 14758. p.164-184
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- Journal Article
- A1
- open access
Pan-genome de Bruijn graph using the bidirectional FM-index

Lore Depuydt (UGent) , Luca Renders (UGent) , Thomas Abeel (UGent) and Jan Fostier (UGent)

(2023) BMC BIOINFORMATICS. 24(1).
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- Conference Paper
- C3
- open access
Approximate pattern matching using search schemes and in-text verification

Luca Renders (UGent) , Lore Depuydt (UGent) and Jan Fostier (UGent)

(2022) Faculty of Engineering and Architecture Research Symposium 2022 (FEARS 2022), Abstracts.
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- Conference Paper
- P1
- open access
Approximate pattern matching using search schemes and in-text verification

Luca Renders (UGent) , Lore Depuydt (UGent) and Jan Fostier (UGent)

(2022) BIOINFORMATICS AND BIOMEDICAL ENGINEERING, PT II. In Lecture notes in computer science 13347. p.419-435

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