Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Pieter Verschaffelt

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine
Faculty of Sciences > Department of Applied mathematics, computer science and statistics

ORCID iD: 0000-0002-6675-1048

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- Book Chapter
Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) and Bart Mesuere (UGent)

(2024) Protein bioinformatics. In Methods in Molecular Biology 2836. p.183-215
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- Miscellaneous
- open access
PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2024)
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- Miscellaneous
- open access
Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) and Bart Mesuere (UGent)

(2023) ARXIV.
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- Journal Article
- A1
- open access
Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses

Pieter Verschaffelt (UGent) , Alessandro Tanca, Marcello Abbondio, Tim Van Den Bossche (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) and Bart Mesuere (UGent)

(2023) JOURNAL OF PROTEOME RESEARCH. 22(8). p.2620-2628
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- PhD Thesis
- open access
Building the Unipept Ecosystem : empowering high-throughput metaproteomics data analysis for characterizing complex microbial communities

Pieter Verschaffelt (UGent)

(2023)
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- Journal Article
- A1
- open access
UMGAP : the Unipept MetaGenomics analysis pipeline

Felix Van der Jeugt, Rien Maertens (UGent) , Aranka Steyaert (UGent) , Pieter Verschaffelt (UGent) , Caroline De Tender (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) BMC GENOMICS. 23(1).
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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180
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- Journal Article
- A1
- open access
Unipept visualizations : an interactive visualization library for biological data

Pieter Verschaffelt (UGent) , James Collier (UGent) , Alexander Botzki (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) BIOINFORMATICS. 38(2). p.562-563
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- Journal Article
- A1
- open access
Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- Miscellaneous
- open access
Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files

Tim Van Den Bossche (UGent) , Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf and Lennart Martens (UGent)

(2021) BIORXIV.

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