Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Pieter Verschaffelt

Faculty of Sciences > Department of Mathematics, Computer Science and Statistics

ORCID iD: 0000-0002-6675-1048

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- open access
The Metaproteomics Initiative : five years of community-driven progress

Tim Van Den Bossche (UGent) , Lucia Grenga, Gelio Alves, Magnus Ø. Arntzen, Dirk Benndorf, Madita Brauer, Daniel Figeys, Celine Henry, Robert L. Hettich, Robert Heyer, et al.

(2026) MICROBIOME. 14(1).
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- A1
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The need for standardization and improved open (meta)data practices in metaproteomics

Tim Van Den Bossche (UGent) , Maximilian Wolf, Jean Armengaud, Magnus Ø. Arntzen, Dirk Benndorf, Daniel Figeys, Lucia Grenga, Robert L. Hettich, Nithu Sara John, Pratik Jagtap, et al.

(2026) MICROBIOME. 14(1).
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The Peptonizer2000 : bringing confidence to metaproteomics

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Simon Van de Vyver (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Thilo Muth

(2026) JOURNAL OF PROTEOME RESEARCH. 25(4). p.1831-1845
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Direct construction of sparse suffix arrays with Libsais

Simon Van de Vyver (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) BMC BIOINFORMATICS. 26(1).
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The microbiologist's guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J. Griffin, et al.

(2025) IMETA. 4(3).
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Direct construction of sparse suffix arrays with Libsais

Simon Van de Vyver (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) bioRXiv.
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The microbiologist’s guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley-Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J Griffin, et al.

(2025) ChemRxiv.
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PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2025) MOLECULAR & CELLULAR PROTEOMICS. 24(3).
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Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande Moortele (UGent) , Bram Devlaminck, Simon Van de Vyver (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.949-954
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The Peptonizer2000 : bringing confidence to metaproteomics

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Simon Van de Vyver (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Thilo Muth

(2024) bioRxiv.

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