Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Ralf Gabriels

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0002-1679-1711

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- Book Chapter
Bioinformatics pipeline for processing single-cell data

Arthur Declercq (UGent) , Nina Demeulemeester (UGent) , Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2024) Mass spectrometry based single cell proteomics. In Methods in molecular biology (MIMB) 2817. p.221-239
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- Journal Article
- A1
- open access
The proteomics standards initiative standardized formats for spectral libraries and fragment ion peak annotations : mzSpecLib and mzPAF

Joshua Klein, Henry Lam, Tytus D. Mak, Wout Bittremieux, Yasset Perez-Riverol, Ralf Gabriels (UGent) , Jim Shofstahl, Helge Hecht, Pierre-Alain Binz, Shin Kawano, et al.

(2024) ANALYTICAL CHEMISTRY. 96(46). p.18491-18501
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- Journal Article
- A1
- open access
Proceedings of the EuBIC-MS developers meeting 2023

Pedro Beltrao, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Tanja Holstein (UGent) , Tobias Kockmann, Alireza Nameni (UGent) , Christian Panse, Ralph Schlapbach, Ludwig Lautenbacher, Matthias Mattanovich, et al.

(2024) JOURNAL OF PROTEOMICS. 305.
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Benefit of in silico predicted spectral libraries in data-independent acquisition data analysis workflows

An Staes (UGent) , Teresa Maia (UGent) , Sara Dufour (UGent) , Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Lennart Martens (UGent) , Kris Gevaert (UGent) , Francis Impens (UGent) and Simon Devos (UGent)

(2024) JOURNAL OF PROTEOME RESEARCH. 23(6). p.2078-2089
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- Journal Article
- A1
- open access
Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model

David Gomez-Zepeda, Danielle Arnold-Schild, Julian Beyrle, Arthur Declercq (UGent) , Ralf Gabriels (UGent) , Elena Kumm, Annica Preikschat, Mateusz Krzysztof Łącki, Aurélie Hirschler, Jeewan Babu Rijal, et al.

(2024) NATURE COMMUNICATIONS. 15.
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- Journal Article
- A1
- open access
MS²Rescore 3.0 is a modular, flexible, and user-friendly platform to boost peptide identifications, as showcased with MS Amanda 3.0

Louise M. Buur, Arthur Declercq (UGent) , Marina Strobl, Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Viktoria Dorfer and Ralf Gabriels (UGent)

(2024) JOURNAL OF PROTEOME RESEARCH. 23(8). p.3200-3207
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- Conference Paper
- C3
Large-scale proteomics profiling of peripheral blood of DM1 patients identifies biomarkers for disease severity and physical activity

P. 't Hoen, D. van As, Tine Claeys (UGent) , R. Salz, Ralf Gabriels (UGent) , Francis Impens (UGent) , Pieter-Jan Volders (UGent) , Lennart Martens (UGent) and B. van Engelen

(2023) NEUROMUSCULAR DISORDERS. In Neuromuscular Disorders 33(Supplement 1). p.S132-S133
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- Journal Article
- A1
- open access
The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions

Myrsini Sakarika (UGent) , Frederiek-Maarten Kerckhof (UGent) , Lotte Van Peteghem, Alexandra Pinto Martins Pereira (UGent) , Tim Van Den Bossche (UGent) , Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Delphi Van Haver (UGent) , Barbara Ulčar (UGent) , Lennart Martens (UGent) , et al.

(2023) MICROBIAL CELL FACTORIES. 22(1).
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- Journal Article
- A1
- open access
Updated MS²PIP web server supports cutting-edge proteomics applications

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Cristina Chiva, Eduard Sabido, Aurelie Hirschler, Christine Carapito, Lennart Martens (UGent) , Sven Degroeve (UGent) and Ralf Gabriels (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(W1). p.W338-W342
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- Journal Article
- A1
- open access
Proteomics standards initiative at twenty years : current activities and future work

Eric W. Deutsch, Juan Antonio Vizcaíno, Andrew R. Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L. Tabb, Mathias Walzer, et al.

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.287-301

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