Annelies Emmaneel

Journal Article
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PIDgeon : an explainable AI model for improved flow cytometry-based screening of lymphoid primary immunodeficiencies

Annelies Emmaneel (UGent) , Jana Neirinck (UGent) , Alba Torres-Valle, Sofie Van Gassen (UGent) , Sarah Bonte (UGent) , Malicorne Buysse (UGent) , Jacques J. M. Van Dongen, Alberto Orfao, Mirjam Van Der Burg, Tomas Kalina, et al.

(2026) CLINICAL CHEMISTRY. 72(5). p.601-612

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Unraveling genotype–phenotype associations and predictive modeling of outcome in acute myeloid leukemia

Artuur Couckuyt, Sofie Van Gassen (UGent) , Annelies Emmaneel (UGent) , Vince Janda (UGent) , Malicorne Buysse (UGent) , Ine Moors (UGent) , Jan Philippé (UGent) , Mattias Hofmans (UGent) , Tessa Kerre (UGent) , Yvan Saeys (UGent) , et al.

(2025) CYTOMETRY PART B-CLINICAL CYTOMETRY. 108(5). p.366-377

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LXR signaling controls homeostatic dendritic cell maturation

Victor Bosteels, Sandra Maréchal (UGent) , Clint De Nolf (UGent) , Sofie Rennen (UGent) , Jonathan Maelfait (UGent) , Simon Tavernier (UGent) , Jessica Vetters (UGent) , Evelien Van De Velde (UGent) , Farzaneh Fayazpour (UGent) , Kim Deswarte (UGent) , et al.

(2023) SCIENCE IMMUNOLOGY. 8(83).

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PhD Thesis

Improving diagnosis of primary immunodeficiencies using computional cytometry

Annelies Emmaneel (UGent)

(2022)

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The Euroflow PID Orientation Tube in the diagnostic workup of primary immunodeficiency : daily practice performance in a tertiary university hospital

Jana Neirinck (UGent) , Annelies Emmaneel (UGent) , Malicorne Buysse (UGent) , Jan Philippé (UGent) , Sofie Van Gassen (UGent) , Yvan Saeys (UGent) , Xavier Bossuyt, Stefanie De Buyser (UGent) , Mirjam van der Burg, Martin Perez-Andres, et al.

(2022) FRONTIERS IN IMMUNOLOGY. 13.

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Challenges in translational machine learning

Artuur Couckuyt, Ruth Seurinck (UGent) , Annelies Emmaneel (UGent) , Katrien Quintelier (UGent) , David Novák (UGent) , Sofie Van Gassen (UGent) and Yvan Saeys (UGent)

(2022) HUMAN GENETICS. 141. p.1451-1466

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PeacoQC : peak-based selection of high quality cytometry data

Annelies Emmaneel (UGent) , Katrien Quintelier (UGent) , Dorine Sichien (UGent) , Paulina Rybakowska, Concepcion Maranon, Marta E. Alarcon-Riquelme, Gert Van Isterdael (UGent) , Sofie Van Gassen (UGent) and Yvan Saeys (UGent)

(2022) CYTOMETRY PART A. 101(4). p.325-338

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High dimensional profiling identifies specific immune types along the recovery trajectories of critically ill COVID19 patients

P. A. Penttila, Sofie Van Gassen (UGent) , D. Panovska, L. Vanderbeke, Y. Van Herck, Katrien Quintelier (UGent) , Annelies Emmaneel (UGent) , J. Filtjens, B. Malengier-Devlies, K. Ahmadzadeh, et al.

(2021) CELLULAR AND MOLECULAR LIFE SCIENCES. 78(8). p.3987-4002

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Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity

L. Vanderbeke, P. Van Mol, Y. Van Herck, F. De Smet, S. Humblet-Baron, K. Martinod, A. Antoranz, I. Arijs, B. Boeckx, F. M. Bosisio, et al.

(2021) NATURE COMMUNICATIONS. 12(1).

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Analyzing high-dimensional cytometry data using FlowSOM

Katrien Quintelier (UGent) , Artuur Couckuyt, Annelies Emmaneel (UGent) , Joachim Aerts, Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2021) NATURE PROTOCOLS. 16(8). p.3775-3801

Academic Bibliography

Annelies Emmaneel

PIDgeon : an explainable AI model for improved flow cytometry-based screening of lymphoid primary immunodeficiencies

Unraveling genotype–phenotype associations and predictive modeling of outcome in acute myeloid leukemia

LXR signaling controls homeostatic dendritic cell maturation

Improving diagnosis of primary immunodeficiencies using computional cytometry

The Euroflow PID Orientation Tube in the diagnostic workup of primary immunodeficiency : daily practice performance in a tertiary university hospital

Challenges in translational machine learning

PeacoQC : peak-based selection of high quality cytometry data

High dimensional profiling identifies specific immune types along the recovery trajectories of critically ill COVID19 patients

Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity

Analyzing high-dimensional cytometry data using FlowSOM

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