Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Louise Deconinck

Faculty of Sciences > Department of Mathematics, Computer Science and Statistics

ORCID iD: 0000-0001-8100-6823

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- PhD Thesis
- open access
On interoperability and trajectory analysis of single-cell transcriptomics data

Louise Deconinck (UGent)

(2025)
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- Journal Article
- A1
- open access
Defining and benchmarking open problems in single-cell analysis

Malte D. Luecken, Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt (UGent) , Daniel C. Strobl, Nikolay S. Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, et al.

(2025) NATURE BIOTECHNOLOGY. 43(7). p.1035-1040
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- Journal Article
- A2
- open access
funkyheatmap : visualising data frames with mixed data types

Robrecht Cannoodt (UGent) , Louise Deconinck (UGent) , Artuur Couckuyt, Nikolay S. Markov*, Luke Zappia, Malte D. Luecken, Marta Interlandi, Yvan Saeys (UGent) and Wouter Saelens (UGent)

(2025) JOURNAL OF OPEN SOURCE SOFTWARE. 10(108).
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- Miscellaneous
- open access
Defining and benchmarking open problems in single-cell analysis

Malte D. Luecken, Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt (UGent) , Daniel C. Strobl, Nikolay S. Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, et al.

(2024) NATURE PORTFOLIO.
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- Journal Article
- A1
- open access
Pass/fail prediction in programming courses

Charlotte Van Petegem, Louise Deconinck (UGent) , Dieter Mourisse, Rien Maertens (UGent) , Niko Strijbol, Bart Dhoedt (UGent) , Bram De Wever (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) JOURNAL OF EDUCATIONAL COMPUTING RESEARCH. 61(1). p.68-95
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A sandbox for prediction and integration of DNA, RNA, and proteins in single cells

Malte D Luecken, Daniel Bernard Burkhardt, Robrecht Cannoodt (UGent) , Christopher Lance, Aditi Agrawal, Hananeh Aliee, Ann T Chen, Louise Deconinck (UGent) , Angela M Detweiler, Alejandro A Granados, et al.

(2021) Proceedings of the Neural Information Processing Systems Track on Datasets and Benchmarks 1 (NeurIPS Datasets and Benchmarks 2021).
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- Journal Article
- A2
- open access
Recent advances in trajectory inference from single-cell omics data

Louise Deconinck (UGent) , Robrecht Cannoodt (UGent) , Wouter Saelens, Bart Deplancke and Yvan Saeys (UGent)

(2021) CURRENT OPINION IN SYSTEMS BIOLOGY. 27.
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- Journal Article
- A1
- open access
Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells

Robrecht Cannoodt (UGent) , Wouter Saelens (UGent) , Louise Deconinck (UGent) and Yvan Saeys (UGent)

(2021) NATURE COMMUNICATIONS. 12(1).