dr. Joris Roels

No current affiliation with UGent

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Sodium perturbs mitochondrial respiration and induces dysfunctional Tregs

Beatriz F. Côrte-Real, Ibrahim Hamad, Rebeca Arroyo Hornero, Sabrina Geisberger, Joris Roels (UGent) , Lauren Van Zeebroeck, Aleksandra Dyczko, Marike W. van Gisbergen, Henry Kurniawan, Allon Wagner, et al.

(2023) CELL METABOLISM. 35(2). p.299-315
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Machine learning pipeline for predicting bone marrow edema along the sacroiliac joints on magnetic resonance imaging

Joris Roels (UGent) , Ann-Sophie De Craemer (UGent) , Thomas Renson (UGent) , Manouk de Hooge (UGent) , Arne Gevaert (UGent) , Thomas Van Den Berghe (UGent) , Lennart Jans (UGent) , Nele Herregods (UGent) , Philippe Carron (UGent) , Filip Van den Bosch (UGent) , et al.

(2023) ARTHRITIS & RHEUMATOLOGY. 75(12). p.2169-2177
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A machine learning pipeline for prediction of bone marrow oedema along the sacroiliac joints on magnetic resonance imaging

Joris Roels (UGent) , Ann-Sophie De Craemer (UGent) , Thomas Renson (UGent) , Manouk de Hooge (UGent) , Arne Gevaert (UGent) , Lennart Jans (UGent) , Nele Herregods (UGent) , Thomas Van Den Berghe (UGent) , Philippe Carron (UGent) , Filip Van den Bosch (UGent) , et al.

(2022) Book of Abstracts 13th International Congress on Spondyloarthritides. In 13th International Congress on Spondyloarthritides p.12-12
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Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

Anneleen Remmerie (UGent) , Liesbet Martens (UGent) , Tinne Thoné (UGent) , Angela Castoldi, Ruth Seurinck (UGent) , Benjamin Pavie (UGent) , Joris Roels (UGent) , Bavo Vanneste (UGent) , Sofie De Prijck (UGent) , Mathias Vanhockerhout (UGent) , et al.

(2020) IMMUNITY. 53(3). p.641-657.e1–e14
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An interactive ImageJ plugin for semi-automated image denoising in electron microscopy

Joris Roels (UGent) , Frank Vernaillen, Anna Kremer (UGent) , Amanda Gonçalves (UGent) , Jan Aelterman (UGent) , Hiep Luong (UGent) , Bart Goossens (UGent) , Wilfried Philips (UGent) , Saskia Lippens (UGent) and Yvan Saeys (UGent)

(2020) NATURE COMMUNICATIONS. 11(1).
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Domain adaptive segmentation in volume electron microscopy imaging

Joris Roels (UGent) , Julian Hennies, Yvan Saeys (UGent) , Wilfried Philips (UGent) and Anna Kreshuk

(2019) 2019 IEEE 16th international symposium on biomedical imaging (ISBI 2019). In IEEE International Symposium on Biomedical Imaging p.1519-1522
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- PhD Thesis
- open access
Geautomatiseerde segmentatie van 3D-elektronenmicroscopiebeelden

Joris Roels (UGent)

(2019)
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An overview of state-of-the-art image restoration in electron microscopy

Joris Roels (UGent) , Jan Aelterman (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Aleksandra Pizurica (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2018) JOURNAL OF MICROSCOPY. 271(3). p.239-254
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Lower bounds on the robustness to adversarial perturbations

Jonathan Peck (UGent) , Joris Roels (UGent) , Bart Goossens (UGent) and Yvan Saeys (UGent)

(2017) Advances in neural information processing systems 30 (NIPS 2017). In Advances in Neural Information Processing Systems 30. p.804-813
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Convolutional neural network pruning to accelerate membrane segmentation in electron microscopy

Joris Roels (UGent) , Jonas De Vylder (UGent) , Jan Aelterman (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2017) 2017 IEEE 14th international symposium on biomedical imaging (ISBI 2017). p.633-637
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Bayesian deconvolution of scanning electron microscopy images using point-spread function estimation and non-local regularization

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) IEEE Engineering in Medicine and Biology Society Conference Proceedings. p.443-447
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Decreasing time consumption of microscopy image segmentation through parallel processing on the GPU

Joris Roels (UGent) , Jonas De Vylder (UGent) , Yvan Saeys (UGent) , Bart Goossens and Wilfried Philips (UGent)

(2016) Lecture Notes in Computer Science. 10016. p.147-159
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- C3
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Automated Membrane Detection in Electron Microscopy using Convolutional Neural Networks

Joris Roels (UGent) , Jonas De Vylder (UGent) , Jan Aelterman (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) Belgian-Dutch Conference on Machine Learning, Abstracts.
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Semi-automated segmentation in 3D electron microscopy imaging

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) Knowledge For Growth, Abstracts.
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From a biological sample to high-quality digital image representation : avoiding and restoring image artifacts through proper acquisition and image restoration

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Chris Guerin (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) EMBL workshop 2016, Abstracts.
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- Miscellaneous
Quasar tutorial: High-level programming of Heterogeneous Hardware

Jonas De Vylder (UGent) , Dirk Van Haerenborgh (UGent) , Joris Roels (UGent) and Bart Goossens (UGent)

(2016)
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Superpixel quality in microscopy images: the impact of noise & denoising

Joris Roels (UGent) , Jonas De Vylder (UGent) , Jan Aelterman (UGent) , Saskia Lippens (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) IFMBE Proceedings. 57. p.258-263
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Image degradation in microscopic images : avoidance, artifacts and solutions

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Saskia Lippens (UGent) , Hiep Luong (UGent) , Chris Guerin (UGent) and Wilfried Philips (UGent)

(2016) Advances in Anatomy Embryology and Cell Biology. 219. p.41-67
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Noise analysis in 3D electron microscopy

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2015) Dutch Bio-Medical Engineering Conference, Abstracts.
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Noise analysis and removal in 3D electron microscopy

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Yvan Saeys (UGent) , Saskia Lippens (UGent) and Wilfried Philips (UGent)

(2014) LECTURE NOTES IN COMPUTER SCIENCE. 8887. p.31-40
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Image optimization for 3D electron microscopy images

Joris Roels (UGent) , Jan Aelterman (UGent) , Hiep Luong (UGent) , Jonas De Vylder (UGent) , Wilfried Philips (UGent) , Saskia Lippens (UGent) and Yvan Saeys (UGent)

(2014) 3View Users Group Meeting and Symposium, Abstracts.

Academic Bibliography

dr. Joris Roels

Sodium perturbs mitochondrial respiration and induces dysfunctional Tregs

Machine learning pipeline for predicting bone marrow edema along the sacroiliac joints on magnetic resonance imaging

A machine learning pipeline for prediction of bone marrow oedema along the sacroiliac joints on magnetic resonance imaging

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

An interactive ImageJ plugin for semi-automated image denoising in electron microscopy

Domain adaptive segmentation in volume electron microscopy imaging

Geautomatiseerde segmentatie van 3D-elektronenmicroscopiebeelden

An overview of state-of-the-art image restoration in electron microscopy

Lower bounds on the robustness to adversarial perturbations

Convolutional neural network pruning to accelerate membrane segmentation in electron microscopy

Bayesian deconvolution of scanning electron microscopy images using point-spread function estimation and non-local regularization

Decreasing time consumption of microscopy image segmentation through parallel processing on the GPU

Automated Membrane Detection in Electron Microscopy using Convolutional Neural Networks

Semi-automated segmentation in 3D electron microscopy imaging

From a biological sample to high-quality digital image representation : avoiding and restoring image artifacts through proper acquisition and image restoration

Quasar tutorial: High-level programming of Heterogeneous Hardware

Superpixel quality in microscopy images: the impact of noise & denoising

Image degradation in microscopic images : avoidance, artifacts and solutions

Noise analysis in 3D electron microscopy

Noise analysis and removal in 3D electron microscopy

Image optimization for 3D electron microscopy images

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