Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Sofie Van Gassen

Faculty of Sciences > Department of Biomedical molecular biology

ORCID iD: 0000-0002-7119-5330

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PIDgeon : an explainable AI model for improved flow cytometry-based screening of lymphoid primary immunodeficiencies

Annelies Emmaneel (UGent) , Jana Neirinck (UGent) , Alba Torres-Valle, Sofie Van Gassen (UGent) , Sarah Bonte (UGent) , Malicorne Buysse (UGent) , Jacques J. M. Van Dongen, Alberto Orfao, Mirjam Van Der Burg, Tomas Kalina, et al.

(2026) CLINICAL CHEMISTRY.
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Testosterone and Estrogen Differentially Regulate Human CD4⁺ T-Cell Responses During Gender-Affirming Hormone Therapy

Sebastian Riemann (UGent) , Jeroen Vervalcke (UGent) , Mattias Hofmans (UGent) , Yaël Sertons (UGent) , Pauline Breughe (UGent) , Malicorne Buysse (UGent) , Sofie Van Gassen (UGent) , Tania Maes (UGent) , Guy T'Sjoen (UGent) , Guy Brusselle (UGent) , et al.

(2026)
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CytoNormPy enables a fast and scalable removal of batch effects in cytometry datasets

Tarik Exner, Nicolaj Hackert, Luca Leomazzi (UGent) , Sofie Van Gassen (UGent) , Yvan Saeys (UGent) , Hanns-Martin Lorenz and Ricardo Grieshaber-Bouyer

(2025) CYTOMETRY PART A. 107(9). p.629-635
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Unraveling genotype–phenotype associations and predictive modeling of outcome in acute myeloid leukemia

Artuur Couckuyt, Sofie Van Gassen (UGent) , Annelies Emmaneel (UGent) , Vince Janda (UGent) , Malicorne Buysse (UGent) , Ine Moors (UGent) , Jan Philippé (UGent) , Mattias Hofmans (UGent) , Tessa Kerre (UGent) , Yvan Saeys (UGent) , et al.

(2025) CYTOMETRY PART B-CLINICAL CYTOMETRY. 108(5). p.366-377
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CytoNorm 2.0 : a flexible normalization framework for cytometry data without requiring dedicated controls

Katrien Quintelier (UGent) , Marcella Willemsen, Victor Bosteels, Joachim G. J. V. Aerts, Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2025) CYTOMETRY PART A. 107(2). p.69-87
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Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools

Artuur Couckuyt, Benjamin Rombaut (UGent) , Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2024) BIOINFORMATICS. 40(4).
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Myelodysplastic neoplasms dissected into indolent, leukaemic and unfavourable subtypes by computational clustering of haematopoietic stem and progenitor cells

Margot F. van Spronsen, Sofie Van Gassen (UGent) , Carolien Duetz, Theresia M. Westers, Yvan Saeys (UGent) and Arjan A. van de Loosdrecht

(2024) LEUKEMIA. 38. p.pages1365-1377
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A robust pipeline for high-content, high-throughput immunophenotyping reveals age- and genetics-dependent changes in blood leukocytes

Thomas Liechti, Sofie Van Gassen (UGent) , Margaret Beddall, Reid Ballard, Yaser Iftikhar, Renguang Du, Thiagarajan Venkataraman, David Novák (UGent) , Massimo Mangino, Stephen Perfetto, et al.

(2023) CELL REPORTS METHODS. 3(10).
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Adjuvant dendritic cell-based immunotherapy after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy in patients with malignant peritoneal mesothelioma : a phase II clinical trial

Michelle Dietz, Katrien Quintelier (UGent) , Job P. van Kooten, Nadine L. de Boer, Madelief Vink, Alexandra R. M. Brandt-Kerkhof, Cornelis Verhoef, Yvan Saeys (UGent) , Joachim G. J. V. Aerts, Marcella Willemsen, et al.

(2023) JOURNAL FOR IMMUNOTHERAPY OF CANCER. 11(8).
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Single-cell molecular profiling using ex vivo functional readouts fuels precision oncology in glioblastoma

Dena Panovska, Pouya Nazari, Basiel Cole, Pieter-Jan Creemers, Marleen Derweduwe, Lien Solie, Sofie Van Gassen (UGent) , Annelies Claeys, Tatjana Verbeke, Elizabeth F. Cohen, et al.

(2023) CELLULAR AND MOLECULAR LIFE SCIENCES. 80(6).

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