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- 2024
- Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling (2024) FRONTIERS IN MICROBIOLOGY. 15.
- 2023
- Competitive interactions facilitate resistance development against antimicrobials (2023) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 89(10).
- Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance (2023) SCIENTIFIC REPORTS. 13(1).
- Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing (vol 52, pg 331, 2020) (2023) NATURE GENETICS. 55.
- Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii (2023) BMC BIOLOGY. 21(1).
- Whole slide imaging-based prediction of TP53 mutations identifies an aggressive disease phenotype in prostate cancer (2023) CANCER RESEARCH. 83(17). p.2970-2984
- Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices (2023) FRONTIERS IN MICROBIOLOGY. 14.
- Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data (2023) BMC GENOMICS. 24.
- Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium (2023) MICROBIAL GENOMICS. 9(1).
- 2022
- Extracting functional insights from loss-of-function screens using deep link prediction (2022) CELL REPORTS METHODS. 2(2).