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- 2023
- Whole slide imaging-based prediction of TP53 mutations identifies an aggressive disease phenotype in prostate cancer (2023) CANCER RESEARCH. 83(17). p.2970-2984
- Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices (2023) FRONTIERS IN MICROBIOLOGY. 14.
- Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data (2023) BMC GENOMICS. 24.
- Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium (2023) MICROBIAL GENOMICS. 9(1).
- 2022
- Extracting functional insights from loss-of-function screens using deep link prediction (2022) CELL REPORTS METHODS. 2(2).
- Antibiotic cycling affects resistance evolution independently of collateral sensitivity (2022) MOLECULAR BIOLOGY AND EVOLUTION. 39(12).
- Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study (2022) FOODS. 11(21).
- Evolution of isoform‐level gene expression patterns across tissues during lotus species divergence (2022) PLANT JOURNAL. 112(3). p.830-846
- BLSSpeller to discover novel regulatory motifs in maize (2022) DNA RESEARCH. 29(4).
- Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data (2022)