Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. ir. Jan Fostier

Faculty of Engineering and Architecture > Department of Information technology

ORCID iD: 0000-0002-9994-8269

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Lossless approximate pattern matching : automated design of efficient search schemes

Luca Renders (UGent) , Lore Depuydt (UGent) , Sven Rahmann and Jan Fostier (UGent)

(2024) JOURNAL OF COMPUTATIONAL BIOLOGY. 31(10). p.975-989
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B-move : faster bidirectional character extensions in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, T. Gagie and Jan Fostier (UGent)

(2024) 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). In Leibniz International Proceedings in Informatics (LIPIcs) 312. p.1-18
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Faster maximal exact matches with lazy LCP evaluation

Adrián Goga, Lore Depuydt (UGent) , Nathaniel K. Brown, Jan Fostier (UGent) , Travis Gagie and Gonzalo Navarro

(2024) 2024 Data Compression Conference (DCC). In IEEE Data Compression Conference p.123-132
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Automated design of efficient search schemes for lossless approximate pattern matching

Luca Renders (UGent) , Lore Depuydt (UGent) , Sven Rahmann and Jan Fostier (UGent)

(2024) RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, RECOMB 2024. In Lecture Notes in Computer Science 14758. p.164-184
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Pan-genome de Bruijn graph using the bidirectional FM-index

Lore Depuydt (UGent) , Luca Renders (UGent) , Thomas Abeel (UGent) and Jan Fostier (UGent)

(2023) BMC BIOINFORMATICS. 24(1).
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Detecting translocation of DNA nanostructures through nanopores : first steps towards structural barcode readout

Pratima Upretee (UGent) , Sybren Santermans, Koen Martens, Juliette Gevers, Sanjin Marion, Wouter Van Den Bosch, Jan Fostier (UGent) and Nilesh Madhu (UGent)

(2023) 2023 31st European Signal Processing Conference (EUSIPCO). In European Signal Processing Conference p.1205-1209
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Oracle selection provides insight into how far off practice is from Utopia in plant breeding

David Vanavermaete, Steven Maenhout (UGent) , Jan Fostier (UGent) and Bernard De Baets (UGent)

(2023) FRONTIERS IN PLANT SCIENCE. 14.
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Improved node and arc multiplicity estimation in de Bruijn graphs using approximate inference in conditional random fields

Aranka Steyaert (UGent) , P. Audenaert (UGent) and Jan Fostier (UGent)

(2023) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 20(3). p.1995-2006
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- C3
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Approximate pattern matching using search schemes and in-text verification

Luca Renders (UGent) , Lore Depuydt (UGent) and Jan Fostier (UGent)

(2022) Faculty of Engineering and Architecture Research Symposium 2022 (FEARS 2022), Abstracts.
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BLSSpeller to discover novel regulatory motifs in maize

Razgar Seyed Rahmani, Dries Decap (UGent) , Jan Fostier (UGent) and Kathleen Marchal (UGent)

(2022) DNA RESEARCH. 29(4).

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