Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. Willem Waegeman

Faculty of Bioscience Engineering > Department of Data analysis and mathematical modelling

ORCID iD: 0000-0002-5950-3003

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- Journal Article
- A1
- open access
Hyperparameter optimization of two-branch neural networks in multi-target prediction

Dimitrios Iliadis (UGent) , Marcel Wever, Bernard De Baets (UGent) and Willem Waegeman (UGent)

(2024) APPLIED SOFT COMPUTING. 165.
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- Journal Article
- A2
- open access
Machine-learning-based prediction of disability progression in multiple sclerosis : an observational, international, multi-center study

Edward De Brouwer, Thijs Becker, Lorin Werthen-Brabants (UGent) , Pieter Dewulf (UGent) , Dimitrios Iliadis (UGent) , Cathérine Dekeyser (UGent) , Guy Laureys (UGent) , Bart Van Wijmeersch, Veronica Popescu, Tom Dhaene (UGent) , et al.

(2024) PLOS DIGITAL HEALTH. 3(7).
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- Miscellaneous
- open access
Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) , Peter Vandamme (UGent) and Willem Waegeman (UGent)

(2024)
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- Journal Article
- A1
- open access
Uncertainty-aware single-cell annotation with a hierarchical reject option

Lauren Theunissen (UGent) , Thomas Mortier (UGent) , Yvan Saeys (UGent) and Willem Waegeman (UGent)

(2024) BIOINFORMATICS. 40(3).
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- Journal Article
- A1
- open access
A framework for tracing timber following the Ukraine invasion

Thomas Mortier (UGent) , Jakub Truszkowski, Marigold Norman, Markus Boner, Bogdan Buliga, Caspar Chater, Henry Jennings, Jade Saunders, Rosie Sibley, Alexandre Antonelli, et al.

(2024) NATURE PLANTS. 10(3). p.390-401
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- Journal Article
- A1
- open access
A comparison of embedding aggregation strategies in drug-target interaction prediction

Dimitrios Iliadis (UGent) , Bernard De Baets (UGent) , Tapio Pahikkala and Willem Waegeman (UGent)

(2024) BMC BIOINFORMATICS. 25(1).
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- Journal Article
- A1
- open access
Out-of-sample R2 : estimation and inference

Stijn Hawinkel (UGent) , Willem Waegeman (UGent) and Steven Maere (UGent)

(2024) AMERICAN STATISTICIAN. 78(1). p.15-25
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- Miscellaneous
- open access
An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2023)
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- Miscellaneous
- open access
An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2023)
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- Journal Article
- A1
- open access
DeepMTP : a Python-based deep learning framework for multi-target prediction

Dimitrios Iliadis (UGent) , Bernard De Baets (UGent) and Willem Waegeman (UGent)

(2023) SOFTWAREX. 23.

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