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- 2012
- The Ectocarpus genome and brown algal genomics: the Ectocarpus Genome Consortium
- 2011
- The genome of Tetranychus urticae reveals herbivorous pest adaptations
- 2010
- The Ectocarpus genome and the independent evolution of multicellularity in brown algae
- Module network inference from a cancer gene expression data set identifies microRNA regulated modules
- TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
- Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data
- 2009
- Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development
- 2008
- Generic eukaryotic core promoter prediction using structural features of DNA
- 2007
- Validating module network learning algorithms using simulated data
- A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana
- 2006
- The small RNA world of plants
- A Scalable Hardware Accelerator for Comparing Protein Sequences
- 2004
-
Detection of 91 potential in plant conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
(2004) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 101(31). p.11511-11516 Mark
- Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences