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- Journal Article
- A1
- open access
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
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- Journal Article
- A1
- open access
Complex evolutionary dynamics of massively expanded chemosensory receptor families in an extreme generalist chelicerate herbivore
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- Journal Article
- A1
- open access
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
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- Journal Article
- A1
- open access
The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution
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Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne
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The Ectocarpus genome and brown algal genomics : the Ectocarpus Genome Consortium
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- Journal Article
- A1
- open access
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
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ORCAE: online resource for community annotation of eukaryotes
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Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen
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A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust)
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Higher intron loss rate in Arabidopsis thaliana than A. lyrata is consistent with stronger selection for a smaller genome
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- Conference Paper
- C3
- open access
Nature, nurture and the structure of macroalgal genomes
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The genome of Tetranychus urticae reveals herbivorous pest adaptations
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- Journal Article
- A1
- open access
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi
(2011) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 108(22). p.9166-9171 -
The genome of the domesticated apple (Malus x domestica Borkh.)
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The Ectocarpus genome and the independent evolution of multicellularity in brown algae
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Evolution of multicellularity in the heterokont lineage : analysis of the Ectocarpus siliculosus genome sequence
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- Journal Article
- A1
- open access
Open access to sequence: Browsing the Pichia pastoris genome
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- Journal Article
- A1
- open access
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
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- Journal Article
- A1
- open access
Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress
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Genome sequence of the recombinant protein production host Pichia pastoris
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Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
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- Journal Article
- A1
- open access
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
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Genome annotation in plants and fungi: EuGène as a model platform
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Generic eukaryotic core promoter prediction using structural features of DNA
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The FTO gene, implicated in human obesity, is found only in vertebrates and marine algae
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The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
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Unique regulation of the Calvin cycle in the ultrasmall green alga Ostreococcus
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The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
(2007) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 104(18). p.7705-7710 -
How many genes are there in plants (... and why are they there)?
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In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists
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The small RNA world of plants
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The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
(2006) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103(31). p.11647-11652 -
- Journal Article
- A1
- open access
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
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EST data suggest that poplar is an ancient polyploid
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Genome analysis of the world's smallest free-living eukaryote Ostreococcus tauri unveils unique genome heterogeneity
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- Journal Article
- A1
- open access
Large-scale structural analysis of the core promoter in mammalian and plant genomes
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SpliceMachine: predicting splice sites from high-dimensional local context representations
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Splice site prediction in eukaryote genome sequences : the algorithmic issues
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Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements
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- Journal Article
- A1
- open access
Versatile gene-specific sequence tags for Arabidopsis functional genomics : trancript profiling and reverse genetics applications
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Detection of 91 potential in plant conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
(2004) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 101(31). p.11511-11516 -
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
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- Conference Paper
- C1
- open access
Selecting relevant features for gene structure prediction
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- Journal Article
- A1
- open access
Feature selection for splice site prediction: A new method using EDA-based feature ranking
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Feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction
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Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction
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Orphan gene finding: an exon assembly approach