Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. ir. Gerben Menschaert

Faculty of Bioscience Engineering > Department of Data analysis and mathematical modelling

Work address: Coupure Links 653, geb. A
9000 Gent
Email: Gerben.Menschaert@UGent.be
ORCID iD: 0000-0002-7575-2085

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- Journal Article
- open access
A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis

Eisuke Hayakawa, Hiroshi Watanabe, Gerben Menschaert (UGent) , Thomas W. Holstein, Geert Baggerman and Liliane Schoofs

(2019) PLOS ONE.
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- Journal Article
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A methodology for discovering novel brain-relevant peptides: Combination of ribosome profiling and peptidomics

Ravi Tharakan, Simion Kreimer, Ceereena Ubaida-Mohien, Joelle Lavoie, Volodimir Olexiouk, Gerben Menschaert (UGent) , Nicholas T. Ingolia, Robert N. Cole, Koko Ishizuka, Akira Sawa, et al.

(2019) Neuroscience Research. p.31-37
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Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics

Harshavardhan Budamgunta, Evelyne Maes, Hanny Willems, Gerben Menschaert (UGent) , Karin Schildermans, Ajay Anand Kumar, Kurt Boonen and Geert Baggerman

(2019) JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 1124. p.256-264
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- A1
- open access
Beyond genes : re-identifiability of proteomic data and its implications for personalized medicine

Kurt Boonen, Kristien Hens, Gerben Menschaert (UGent) , Geert Baggerman, Dirk Valkenborg and Gokhan Ertaylan

(2019) GENES. 10(9).
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mQC: A post-mapping data exploration tool for ribosome profiling

Steven Verbruggen (UGent) and Gerben Menschaert (UGent)

(2019) COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE. 181.
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PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms

Steven Verbruggen (UGent) , Elvis Ndah (UGent) , Wim Van Criekinge (UGent) , Siegfried Gessulat, Bernhard Kuster, Mathias Wilhelm, Gerben Menschaert (UGent) and Petra Van Damme (UGent)

(2019) MOLECULAR & CELLULAR PROTEOMICS. 18(suppl. 1). p.S126-S140
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- A1
- open access
DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns

Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(6).
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Proteomics Standards Initiative extended FASTA format

Pierre-Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J Chalkley, Gerben Menschaert (UGent) , Emanuele Alpi, Karl Clauser, Jimmy K Eng, Lydie Lane, et al.

(2019) JOURNAL OF PROTEOME RESEARCH. 18(6). p.2686-2692
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- Journal Article
- A1
- open access
mQC : a post-mapping data exploration tool for ribosome profiling

Steven Verbruggen (UGent) and Gerben Menschaert (UGent)

(2018) COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE. 181.
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Deletion 6q drives T-cell leukemia progression by ribosome modulation

Stéphanie Gachet, Tiama El-Chaar, David Avran, Eulalia Genesca, Frédéric Catez, Samuel Quentin, Marc Delord, Gabriel Thérizols, Delphine Briot, Godelieve Meunier, et al.

(2018) CANCER DISCOVERY. 8(12). p.1614-1631

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