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A comparative genomic analysis of Fructobacillus evanidus sp. nov. from bumble bees
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- Journal Article
- A1
- open access
Various cold storage-backslopping cycles show the robustness of Limosilactobacillus fermentum IMDO 130101 as starter culture for Type 3 sourdough production
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- Journal Article
- A1
- open access
Microbial ecology and metabolite dynamics of backslopped triticale sourdough productions and the impact of scale
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The exploration of dominant spoilage bacteria in blue mussels (Mytilus edulis) stored under different modified atmospheres by MALDI-TOF MS in combination with 16S rRNA sequencing
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The importance of risk assessment for the use of microorganisms in the food and feed chains
(2023) -
Search for novel bacteria to valorize in the food industry - A culturomics approach
(2023) -
StrainInSight: a unique genome database to facilitate novel strain discovery for the food industry
(2023) -
StrainInSight: a unique private strain collection and innovative tools to facilitate novel strain discovery in the food and feed industry
(2023) -
Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax
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- Journal Article
- open access
A case study of the diet-microbiota-parasite interplay in bumble bees
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- Journal Article
- A1
- open access
Comparative genomic analysis of Periweissella and the characterization of novel motile species
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- Journal Article
- A1
- open access
The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms
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Potential for climate change driven spatial mismatches between apple crops and their wild bee pollinators at a continental scale
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- Journal Article
- A1
- open access
Intraspecific size shifts in generalist bumblebees and flowers lead to low functional consequences
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In vitro susceptibility of Achromobacter species isolated from cystic fibrosis patients : a 6-year survey
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- Journal Article
- A1
- open access
New insights into the role of key microorganisms and wooden barrels during lambic beer fermentation and maturation
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- Journal Article
- A1
- open access
Microbiota and pathogens in an invasive bee : Megachile sculpturalis from native and invaded regions
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- Journal Article
- A1
- open access
European bee diversity : taxonomic and phylogenetic patterns
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- Journal Article
- A1
- open access
Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages
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Aristophania vespae gen. nov., sp. nov., isolated from wasps, is related to Bombella and Oecophyllibacter, isolated from bees and ants
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- Journal Article
- A1
- open access
Convivina is a specialised core gut symbiont of the invasive hornet Vespa velutina
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- Journal Article
- A1
- open access
The GEN-ERA toolbox : unified and reproducible workflows for research in microbial genomics
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- Journal Article
- A1
- open access
Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria
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- Journal Article
- A2
- open access
A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont
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Cyclitol metabolism is a central feature of Burkholderia leaf symbionts
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- Conference Paper
- C3
- open access
Isolation and preliminary characterisation of wild yeasts isolated from natural niches for non- and low alcoholic beer production
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In memoriam : Monique Gillis (1942 - 2022)
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Acetobacter vaccinii sp. nov., a novel acetic acid bacterium isolated from blueberry fruit (Vaccinium corymbosum L.)
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- Journal Article
- A2
- open access
Isolation, screening, identification and optimization of culture parameters to produce gamma-aminobutyric acid by Lactiplantibacillus pentosus R13, an isolate from ruoc (fermented shrimp paste)
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- Journal Article
- A1
- open access
A comprehensive investigation into the production of gamma-aminobutyric acid by Limosilactobacillus fermentum NG16, a tuna gut isolate
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A comparative analysis of crop pollinator survey methods along a large-scale climatic gradient
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- Journal Article
- A1
- open access
Introduction to the principles and methods underlying the recovery of metagenome-assembled genomes from metagenomic data
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- Journal Article
- A1
- open access
Ecological, environmental, and management data indicate apple production is driven by wild bee diversity and management practices
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The exploration of microbial profiles in blue mussels (Mytilus edulis) stored under different modified atmospheres
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- Journal Article
- A1
- open access
Campylobacter majalis sp. nov. and Campylobacter suis sp. nov., novel Campylobacter species isolated from porcine gastrointestinal mucosa
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Isolation and identification of a Bacillus sp. from freshwater sediment displaying potent activity against bacteria and phytopathogen fungi
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- Journal Article
- A1
- open access
Signals of adaptation to agricultural stress in the genomes of two European bumblebees
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- Journal Article
- A2
- open access
Microbial diversity and antimicrobial susceptibility in endotracheal tube biofilms recovered from mechanically ventilated COVID-19 patients
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- Journal Article
- A1
- open access
Phylogenomic analyses of Snodgrassella isolates from honeybees and bumblebees reveal taxonomic and functional diversity
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- Journal Article
- A1
- open access
Backslopping time, rinsing of the grains during backslopping, and incubation temperature influence the water kefir fermentation process
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- Journal Article
- A1
- open access
Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics
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Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov. : novel aromatic compound degrading bacteria isolated from garden and forest soil samples
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- Journal Article
- A1
- open access
Description of Pseudoclavibacter triregionum sp. nov. from human blood and Pseudoclavibacter albus comb. nov., and revised classification of the genus Pseudoclavibacter : proposal of Caespitibacter gen. nov., with Caespitibacter soli comb. nov. and Caespitibacter caeni comb. nov
(2022) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 115(4). p.461-472 -
Dominance of honey bees is negatively associated with wild bee diversity in commercial apple orchards regardless of management practices
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Co-cultivation enhanced microbial protein production based on autotrophic nitrogen-fixing hydrogen-oxidizing bacteria
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Outbreak of Burkholderia contaminans endophthalmitis traced to a clinic ventilation system
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- Journal Article
- A1
- open access
Out with the old and in with the new : time to rethink twentieth century chemotaxonomic practices in bacterial taxonomy
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Aliarcobacter, Halarcobacter, Malaciobacter, Pseudarcobacter and Poseidonibacter are later synonyms of Arcobacter : transfer of Poseidonibacter parvus, Poseidonibacter antarcticus, ‘Halarcobacter arenosus’, and ‘Aliarcobacter vitoriensis’ to Arcobacter as Arcobacter parvus comb. nov., Arcobacter antarcticus comb. nov., Arcobacter arenosus comb. nov. and Arcobacter vitoriensis comb. nov.
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- Journal Article
- A1
- open access
Biosynthesis of ditropolonyl sulfide, an antibacterial compound produced by Burkholderia cepacia complex strain R-12632
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- Journal Article
- A1
- open access
Matrix-assisted laser desorption ionization–time of flight mass spectrometry for rapid detection of isolates belonging to the epidemic clones Achromobacter xylosoxidans ST137 and Achromobacter ruhlandii DES from cystic fibrosis patients
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- Journal Article
- A1
- open access
Cutibacterium modestum and 'Propionibacterium humerusii' represent the same species that is commonly misidentified as Cutibacterium acnes
(2021) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 114(8). p.1315-1320 -
Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere
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MALDI-TOF MS insight into the biodiversity of Staka, the artisanal Cretan soured cream
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- Journal Article
- A1
- open access
Bacterial species identification using MALDI-TOF mass spectrometry and machine learning techniques : a large-scale benchmarking study
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- Journal Article
- A1
- open access
The holobiont as a key to the adaptation and conservation of wild bees in the Anthropocene
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Gulosibacter hominis sp. nov. : a novel human microbiome bacterium that may cause opportunistic infections
(2021) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 114(11). p.1841-1854 -
Burkholderia perseverans sp. nov., a bacterium isolated from the Restinga ecosystem, is a producer of volatile and diffusible compounds that inhibit plant pathogens
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- Journal Article
- A1
- open access
Paraburkholderia dioscoreae sp. nov. : a novel plant associated growth promotor
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- Journal Article
- A2
- open access
Clinical course, treatment and visual outcome of an outbreak of Burkholderia contaminans endophthalmitis following cataract surgery
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Identification and characterization of acid-tolerant spore-forming spoilage bacteria from acidified and low-acid pasteurized sauces
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- Journal Article
- A1
- open access
The ever-expanding Pseudomonas genus : description of 43 new species and partition of the Pseudomonas putida group
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- Journal Article
- A1
- open access
Genomic aromatic compound degradation potential of novel Paraburkholderia species : Paraburkholderia domus sp. nov., Paraburkholderia haematera sp. nov. and Paraburkholderia nemoris sp. nov.
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Impact of intraspecific variation on measurements of thermal tolerance in bumble bees
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- Journal Article
- A1
- open access
Bumblebee resilience to climate change, through plastic and adaptive responses
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Characterization of novel Gluconobacter species from fruits and fermented food products : Gluconobacter cadivus sp. nov., Gluconobacter vitians sp. nov. and Gluconobacter potus sp. nov
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- Journal Article
- A1
- open access
Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity
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Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana
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Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria
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Entomobacter blattae gen. nov., sp. nov., a new member of the Acetobacteraceae isolated from the gut of the cockroach Gromphadorhina portentosa
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- Journal Article
- A1
- open access
Network analysis based on unique spectral features enables an efficient selection of genomically diverse operational isolation units
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- Journal Article
- A1
- open access
Presence of the weakly pathogenic Fusarium poae in the Fusarium head blight disease complex hampers biocontrol and chemical control of the virulent Fusarium graminearum pathogen
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- Journal Article
- A1
- open access
The type and concentration of inoculum and substrate as well as the presence of oxygen impact the water kefir fermentation process
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The bacterial diversity of raw Moroccon camel milk
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- Journal Article
- A1
- open access
Burkholderia bacteria produce multiple potentially novel molecules that inhibit carbapenem-resistant gram-negative bacterial pathogens
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Gluconacetobacter dulcium sp. nov., a novel Gluconacetobacter species from sugar-rich environments
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- Journal Article
- A2
- open access
Diagnostic approach for detection and identification of emerging enteric pathogens revisited : the (Ali)arcobacter lanthieri case
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Development of a database for the rapid and accurate routine identification of Achromobacter species by matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF MS)
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- Journal Article
- A1
- open access
Optimization of culture conditions for gamma-aminobutyric acid production by newly identified Pediococcus pentosaceus MN12 isolated from 'mam nem', a fermented fish sauce
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- Journal Article
- A1
- open access
gcType : a high-quality type strain genome database for microbial phylogenetic and functional research
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- Journal Article
- A1
- open access
Decoding the capability of Lactobacillus plantarum W1 isolated from soybean whey in producing an exopolysaccharide
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A critical rebuttal of the proposed division of the genus Arcobacter into six genera using comparative genomic, phylogenetic, and phenotypic criteria
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- Journal Article
- A1
- open access
Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. isolated from apple cider vinegar
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- Journal Article
- A1
- open access
Roadmap for naming uncultivated archaea and bacteria
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- Journal Article
- A1
- open access
Comparative microbiomics of tephritid frugivorous pests (Diptera : Tephritidae) from the field : a tale of high variability across and within species
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An emended description of Arcobacter anaerophilus Sasi Jyothsna et al. 2013 : genomic and phenotypic insights
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Novel acetic acid bacteria from cider fermentations : acetobacter conturbans sp. nov. and acetobacter fallax sp. nov
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Nocardiopsis dassonvillei subsp. crassaminis subsp. nov., isolated from freshwater sediment, and reappraisal of Nocardiopsis alborubida Grund and Kroppenstedt 1990 emend. Nouioui et al. 2018
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Micromonospora fluminis sp. nov., isolated from mountain river sediment
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Microbial enrichment, functional characterization and isolation from a cold seep yield piezotolerant obligate hydrocarbon degraders
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- Miscellaneous
- open access
Genome sequence-based curation of PubMLST data challenges interspecies recombination in the Burkholderia cepacia complex
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- Journal Article
- A1
- open access
Burkholderia cepacia complex taxon K : where to split?
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MALDI-TOF MS profiling of non-starter lactic acid bacteria from artisanal cheeses of the Greek island of Naxos
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A taxonomic note on the genus Lactobacillus : description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
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- Journal Article
- A1
- open access
Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like Type III secretion system and low virulence
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- Journal Article
- A1
- open access
PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing
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Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production
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A method for comprehensive proteomic analysis of human faecal samples to investigate gut dysbiosis in patients with cystic fibrosis
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- Journal Article
- A1
- open access
The buffer capacity and calcium concentration of water influence the microbial species diversity, grain growth, and metabolite production during water kefir fermentation
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- Journal Article
- A1
- open access
Impact of sample preservation and manipulation on insect gut microbiome profiling : a test case with fruit flies (Diptera, Tephritidae)
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Tracking the sources of psychrotrophic bacteria contaminating chicken cuts during processing
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Actinomadura roseirufa sp. nov., producer of semduramicin, a polyether ionophore
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- Journal Article
- A1
- open access
Comparative genomics of Pandoraea, a genus enriched in xenobiotic biodegradation and metabolism
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Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria
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- Journal Article
- A1
- open access
Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data
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- Journal Article
- A1
- open access
Gene expansion and positive selection as bacterial adaptations to oligotrophic conditions
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Influence of microbiota in the susceptibility of parasitic wasps to abamectin insecticide : deep sequencing, esterase and toxicity tests
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Lactococci dominate the bacterial communities of fermented maize, sorghum and millet slurries in Zimbabwe
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Microbial transplant to shift a malodorous armpit microbiome
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Temporal and spatial distribution of the acetic acid bacterium communities throughout the wooden casks used for the fermentation and maturation of lambic beer underlines their functional role
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In vitro susceptibility of Burkholderia cepacia complex isolated from cystic fibrosis patients to ceftazidime-avibactam and ceftolozane-tazobactam
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Filling the gaps in clinical proteomics : a do-it-yourself guide for the identification of the emerging pathogen Arcobacter by matrix-assisted laser desorption ionization-time of flight mass spectrometry
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Enzymatic degradation of mineral binders in cereals : impact on iron and zinc bioaccessibility
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Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov.
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Genome sequences and description of novel exopolysaccharides producing species Komagataeibacter pomaceti sp. nov. and reclassification of Komagataeibacter kombuchae (Dutta and Gachhui 2007) Yamada et al., 2013 as a later heterotypic synonym of Komagataeibacter hansenii (Gossele et al. 1983) Yamada et al., 2013
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- Journal Article
- A1
- open access
Wort substrate consumption and metabolite production during lambic beer fermentation and maturation explain the successive growth of specific bacterial and yeast species
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A prokaryotic-eukaryotic relation in the fat body of Bombus terrestris
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Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris
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Traditional fermentation and cooking of finger millet : implications on mineral binders and subsequent bioaccessibility
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Baobab fruit pulp and mopane worm as potential functional ingredients to improve the iron and zinc content and bioaccessibility of fermented cereals
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Oxygen and diverse nutrients influence the water kefir fermentation process
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Antimicrobial activity against Mycobacterium tuberculosis under in vitro lipid-rich dormancy conditions
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High amorphous poly-beta-hydroxybutyrate (PHB) content in a probiotic Bacillus strain displays better protective effects in Vibrio-challenged gnotobiotic Artemia
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Halomonas nigrificans sp. nov., isolated from cheese
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A different gut microbial community between larvae and adults of a wild bumblebee nest (Bombus pascuorum)
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Flow cytometric fingerprinting for microbial strain discrimination and physiological characterization
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Large-scale cultivation of the bumblebee gut microbiota reveals an underestimated bacterial species diversity capable of pathogen inhibition
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Iron and zinc bioaccessibility of fermented maize, sorghum and millets from five locations in Zimbabwe
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Microbial ecology of traditional beer fermentations
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Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil
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Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment
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Identification of acetic acid bacteria through matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and report of Gluconobacter nephelii Kommanee et al. 2011 and Gluconobacter uchimurae Tanasupawat et al. 2012 as later heterotypic synonyms of Gluconobacter japonicus Malimas et al. 2009 and Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980) emend. Gosselé et al. 1983, respectively
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- Journal Article
- A1
- open access
Characterization of Mycobacterium chelonae-like strains by comparative genomics
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Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater
(2017) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 110(9). p.1189-1197 -
Clinical and microbiological profile of chronic Burkholderia cepacia complex infections in a cystic fibrosis reference hospital in Brazil
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Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium
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- Journal Article
- A1
- open access
Minimal standards for describing new species belonging to the families Campylobacteraceae and Helicobacteraceae : Campylobacter, Arcobacter, Helicobacter and Wolinella spp.
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Arcobacter haliotis sp. nov., isolated from abalone species Haliotis gigantea
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Genetic regulation of Mycobacterium tuberculosis in a lipid-rich environment
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- Journal Article
- A1
- open access
In vitro activity of bedaquiline against rapidly growing nontuberculous mycobacteria
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- Journal Article
- A1
- open access
The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis
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- Journal Article
- A1
- open access
Comparative genomics of Burkholderia singularis sp. nov., a low G+C content, free-living bacterium that defies taxonomic dissection of the genus Burkholderia
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Gilliamella intestini sp. nov., Gilliamella bombicola sp. nov., Gilliamella bombi sp. nov. and Gilliamella mensalis sp. nov. : four novel Gilliamella species isolated from the bumblebee gut
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- Journal Article
- A1
- open access
Reconciliation between operational taxonomic units and species boundaries
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Aeromicrobium choanae sp. nov., an actinobacterium isolated from the choana of a garden warbler
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- Journal Article
- A1
- open access
Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure
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Can fermentation be used as a sustainable strategy to reduce iron and zinc binders in traditional African cereal porridges and gruels?
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Detection, isolation and characterization of Fusobacterium gastrosuis sp. nov. colonizing the stomach of pigs
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Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis
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Effect of oral administration of lactic acid bacteria on colony performance and gut microbiota in indoor-reared bumblebees (Bombus terrestris)
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Acetic acid bacteria in fermented food and beverage ecosystems
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Fusobacterium gastrosuis sp. nov. : a major component of the porcine gastric microbiota
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Fusobacterium gastrosuis sp. nov. : a major component of the porcine gastric microbiota
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Notes on the use of Greek word roots in genus and species names of prokaryotes
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- Journal Article
- A1
- open access
Trait differentiation within the fungus-feeding (mycophagous) bacterial genus Collimonas
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Proposal of Helicobacter canicola sp. nov., previously identified as Helicobacter cinaedi, isolated from canines
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Helicobacter saguini, a novel Helicobacter isolated from cotton-top tamarins with ulcerative colitis, has proinflammatory properties and induces typhlocolitis and dysplasia in gnotobiotic IL-10−/−mice
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Combined approach to the identification of clinically infrequent non-tuberculous mycobacteria in Argentina
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Corynebacterium lowii sp. nov. and Corynebacterium oculi sp. nov., derived from human clinical disease and an emended description of Corynebacterium mastitidis
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Helicobacter apri sp. nov., isolated from wild boars
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Selected Lactobacillus strains isolated from sugary and milk kefir reduce Salmonella infection of epithelial cells in vitro
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Optimizing of a protein extraction method for Mycobacterium tuberculosis proteome analysis using mass spectrometry
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- Journal Article
- A1
- open access
New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase
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Proposal of Verticiella gen. nov as replacement for the illegitimate prokaryotic genus name Verticia Vandamme et al. 2015
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Matrix-assisted laser desorption/ionization time-of-flight mas spectrometry (MALDI-TOF MS) for brewing microbiology
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The unique peptidome : taxon-specific tryptic peptides as biomarkers for targeted metaproteomics
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- Journal Article
- A1
- open access
Whole-genome sequence analysis of Bombella intestini LMG 28161T, a novel acetic acid bacterium isolated from the crop of a red-tailed bumble bee, Bombus lapidarius
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Effect of fermentation and cooking on soluble and bound phenolic profiles of finger millet sour porridge
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Extensive cultivation of soil and water samples yields various pathogens in patients with cystic fibrosis but not Burkholderia multivorans
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Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.
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- Journal Article
- A1
- open access
PCR detection of Burkholderia multivorans in water and soil samples
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- Journal Article
- A1
- open access
Phylogenomic study of Burkholderia glathei-like organisms, proposal of 13 novel Burkholderia species and emended descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae
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Apibacter mensalis sp. nov. : a rare member of the bumblebee gut microbiota
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- Journal Article
- A2
- open access
Members of the genus Burkholderia: good and bad guys [version 1]
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MALDI-TOF MS as a novel tool for dereplication and characterization of microbiota in bacterial diversity studies
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- Journal Article
- A1
- open access
Phylogenomic analysis reveals an Asian origin for African Burkholderia pseudomallei and further supports melioidosis endemicity in Africa
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Microbial diversity and metabolite composition of Belgian red-brown acidic ales
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Bifidobacterium aquikefiri sp nov., isolated from water kefir
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Burkholderia : an update on taxonomy and biotechnological potential as antibiotic producers
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Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011
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Unipept web services for metaproteomics analysis
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Divergence between the highly virulent zoonotic pathogen Helicobacter heilmannii and its closest relative, the low-virulence 'Helicobacter ailurogastricus' sp. nov.
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Faecal proteomics : a tool to investigate dysbiosis and inflammation in patients with cystic fibrosis
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Fusobacterium gastrosuis sp. nov. : a major component of the porcine gastric microbiota
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A cross-sectional and longitudinal metaproteomics approach reveals intestinal dysbiosis, and the presence of markers of chronic inflammation and mucus-related proteins in faecal samples of patients with cystic fibrosis
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Hydromonas duriensis gen. nov., sp. nov., isolated from freshwater
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Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax
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Taxonomy and classification of bacteria
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Nghiên cú'u quân xã vi khuân trong nem chua bâng phu'o'ng pháp không phu thuôc vào nuôi cáy
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- Journal Article
- A1
- open access
Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment
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Leuconostoc rapi sp nov., isolated from sous-vide-cooked rutabaga
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Staphylococcus petrasii subsp. pragensis subsp. nov., occurring in human clinical material
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- Miscellaneous
- open access
Genomic encyclopedia of bacterial and archaeal type strains, phase III : the genomes of soil and plant-associated and newly described type strains
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Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.
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Formosa haliotis sp. nov., a brown-alga-degrading bacterium isolated from the gut of the abalone Haliotis gigantea
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Enterococcus bulliens sp. nov., a novel lactic acid bacterium isolated from camel milk
(2015) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 108(5). p.1257-1265 -
- Journal Article
- A1
- open access
Performance of four transport and storage systems for molecular detection of multidrug-resistant tuberculosis
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Mycobacterium franklinii sp. nov., a species closely related to members of the Mycobacterium chelonae-Mycobacterium abscessus group
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Antimicrobial susceptibility of rapidly growing mycobacteria using the rapid colorimetric method
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Sensitivity pattern of second line anti-tuberculosis drugs against clinical isolates of multidrug resistant Mycobacterium tuberculosis
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Evaluation of the speed-oligo Mycobacteria assay for the identification of nontuberculous mycobacteria
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Mycobacterium saopaulense sp. nov., a rapidly growing mycobacterium closely related to members of the Mycobacterium chelonae-Mycobacterium abscessus group
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Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov.
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Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources
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Bombella intestini gen. nov., sp. nov., an acetic acid bacterium isolated, from bumble bee crop
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Bifidobacterium commune sp. nov. isolated from the bumble bee gut
(2015) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 107(5). p.1307-1313 -
Novel lactic acid bacteria isolated from the bumble bee gut: Convivina intestini gen. nov., sp. nov., Lactobacillus bombicola sp. nov., and Weissella bombi sp. nov.
(2015) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 107(5). p.1337-1349 -
- Journal Article
- A1
- open access
16S rRNA Amplicon sequencing demonstrates that indoor-reared bumblebees (Bombus terrestris) harbor a core subset of bacteria normally associated with the wild host
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- Journal Article
- A1
- open access
Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy
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Streptococcus tangierensis sp. nov. and Streptococcus cameli sp. nov., two novel Streptococcus species isolated from raw camel milk in Morocco
(2015) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 107(2). p.503-510 -
The Unipept metaproteomics analysis pipeline
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The microbial diversity of an industrially produced lambic beer shares members of a traditionally produced one and reveals a core microbiota for lambic beer fermentation
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Microbiota and metabolites of aged bottled gueuze beers converge to the same composition
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Reclassification of Staphylococcus jettensis De Bel et al. 2013 as Staphylococcus petrasii subsp. jettensis subsp. nov. and emended description of Staphylococcus petrasii Pantucek et al. 2013
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Comparative genomics of the Campylobacter lari group
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- Journal Article
- A1
- open access
The domestication of the probiotic bacterium Lactobacillus acidophilus
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Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus)
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Streptococcus moroccensis sp. nov. and Streptococcus rifensis sp. nov., isolated from raw camel milk
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Reclassification of Leuconostoc gasicomitatum as Leuconostoc gelidum subsp. gasicomitatum comb. nov., description of Leuconostoc gelidum subsp. aenigmaticum subsp. nov., designation of Leuconostoc gelidum subsp. gelidum subsp. nov. and emended description of Leuconostoc gelidum
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Predictive value of direct nitrate reductase assay and its clinical performance in the detection of multi- and extensively drug-resistant tuberculosis
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Classical and new assays for detecting drug resistance in tuberculosis
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Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae
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Genomic taxonomy and biodiversity of the Burkholderia cepacia complex
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Application of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry as a monitoring tool for in-house brewer's yeast contamination: a proof of concept
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Acetobacter sicerae sp. nov., isolated from cider and kefir, and identification of the genus Acetobacter by dnaK, groEL and rpoB sequence analysis
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Identification of beer-spoilage bacteria using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
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- Journal Article
- A1
- open access
Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity
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Time to revisit polyphasic taxonomy
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Methyloparacoccus murrellii gen. nov., sp. nov., a methanotroph isolated from pond water
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Burkholderia cordobensis sp. nov., from agricultural soils
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Intraspecific variation in Burkholderia caledonica: Europe vs. Africa and soil vs. endophytic isolates
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- Journal Article
- A1
- open access
Niche differentiation in nitrogen metabolism among methanotrophs within an operational taxonomic unit
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The more, the merrier: heterotroph richness stimulates methanotrophic activity
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A simplified sequence-based identification scheme for Bordetella reveals several putative novel species
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Prospective multicentre evaluation of the direct nitrate reductase assay for the rapid detection of extensively drug-resistant tuberculosis
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- Journal Article
- A1
- open access
The microbial diversity of traditional spontaneously fermented lambic beer
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Acetobacter lambici sp. nov., isolated from fermenting lambic beer
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Effects of growth medium on matrix-assisted laser desorption/ionization time-of-flight mass spectra: a case study of acetic acid bacteria
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Gluconobacter cerevisiae sp. nov., isolated from the brewery environment
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Burkholderia dilworthii sp. nov. isolated from Lebeckia ambigua root nodules
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Customized media based on miniaturized screening improve growth rate and cell yield of methane-oxidizing bacteria of the genus Methylomonas
(2014) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 105(2). p.353-366 -
- Journal Article
- A1
- open access
Ecotoxicology inside the gut : impact of heavy metals on the mouse microbiome
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Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil
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Amoxicillin-clavulanic acid resistance in fecal Enterobacteriaceae from patients with cystic fibrosis and healthy siblings
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Application of culture-dependent and culture-independent methods for the identification of Lactobacillus kefiranofaciens in microbial consortia present in kefir grains
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Staphylococcus jettensis sp nov., a coagulase-negative staphylococcal species isolated from human clinical specimens
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Identification and distribution of Achromobacter species in cystic fibrosis
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Enterococcus ureilyticus sp. nov. and Enterococcus rotai sp. nov., two urease-producing enterococci from the environment
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Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples
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- Conference Paper
- C3
- open access
Monitoring the purity of industrial starter cultures using MALDI-TOF MS
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A culture-dependent and -independent approach for the identification of lactic acid bacteria associated with the production of nem chua, a Vietnamese fermented meat product