dr. Pathmanaban Ramasamy

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0003-4039-5230
Bio (via ORCID): I am interested in the analysis of macromolecular structures, functions and their interactions. I focus my research towards the identification of disease biomarkers by integrated bioinformatic analysis of multi-omics data combining structural, pathway and network approach. Currently, I am working on understanding the folding and stability of proteins by utilizing structural proteomics data.

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- Miscellaneous
- open access
PhosphoLingo : protein language models for phosphorylation site prediction

Jasper Zuallaert (UGent) , Pathmanaban Ramasamy (UGent) , Robbin Bouwmeester (UGent) , Nico Callewaert (UGent) and Sven Degroeve (UGent)

(2023) BioRXiv.
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Reboot surgery for chronic rhinosinusitis with nasal polyposis : recurrence and smell kinetics

Sara Costa Gomes, Carlo Cavaliere, Simonetta Masieri, Thibaut Van Zele (UGent) , Philippe Gevaert (UGent) , Gabriële Holtappels (UGent) , Nan Zhang (UGent) , Pathmanaban Ramasamy (UGent) , Richard Louis Voegels and Claus Bachert (UGent)

(2022) EUROPEAN ARCHIVES OF OTO-RHINO-LARYNGOLOGY. 279(12). p.5691-5699
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- PhD Thesis
Uncovering new knowledge on protein post-translational modifications by large-scale reprocessing and analysis of public proteomics data

Pathmanaban Ramasamy (UGent)

(2022)
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- Journal Article
- A1
- open access
Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone (UGent) , Pathmanaban Ramasamy (UGent) , Jasper Zuallaert (UGent) , Robbin Bouwmeester (UGent) , Berre Van Moer (UGent) , Davy Maddelein (UGent) , Demet Turan (UGent) , Niels Hulstaert (UGent) , Hannah Eeckhaut (UGent) , Elien Vandermarliere (UGent) , et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- Journal Article
- A1
- open access
b2bTools : online predictions for protein biophysical features and their conservation

Luciano Porto Kagami, Gabriele Orlando, Daniele Raimondi, Francois Ancien, Bhawna Dixit (UGent) , Jose Gavaldá-García, Pathmanaban Ramasamy (UGent) , Joel Roca-Martínez, Konstantina Tzavella and Wim Vranken

(2021) NUCLEIC ACIDS RESEARCH. 49(W1). p.W52-W59
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- Journal Article
- A2
- open access
Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Bart Van Puyvelde (UGent) , Katleen Van Uytfanghe (UGent) , Olivier Tytgat, Laurence Van Oudenhove, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Simon Daled (UGent) , Tim Van Den Bossche (UGent) , Pathmanaban Ramasamy (UGent) , Sigrid Verhelst (UGent) , et al.

(2021) JACS AU. 1(6). p.750-765
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- Journal Article
- A1
- open access
Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban Ramasamy (UGent) , Demet Turan (UGent) , Natalia Tichshenko (UGent) , Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Wim Vranken and Lennart Martens (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3478-3486

Academic Bibliography

dr. Pathmanaban Ramasamy

PhosphoLingo : protein language models for phosphorylation site prediction

Reboot surgery for chronic rhinosinusitis with nasal polyposis : recurrence and smell kinetics

Uncovering new knowledge on protein post-translational modifications by large-scale reprocessing and analysis of public proteomics data

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

b2bTools : online predictions for protein biophysical features and their conservation

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Scop3P : a comprehensive resource of human phosphosites within their full context

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