Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Tanja Holstein

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0002-1552-1453

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- Journal Article
- A1
- open access
The microbiologist's guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J. Griffin, et al.

(2025) IMETA. 4(3).
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- PhD Thesis
Bringing confidence to species identification : probabilistic and proteogenomic approaches for single organism samples and metaproteomes

Tanja Holstein (UGent)

(2025)
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- Miscellaneous
- open access
The microbiologist’s guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley-Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J Griffin, et al.

(2025) ChemRxiv.
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- Journal Article
- A1
- open access
PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2025) MOLECULAR & CELLULAR PROTEOMICS. 24(3).
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- Miscellaneous
The Peptonizer2000 : bringing confidence to metaproteomics

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Simon Van de Vyver (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Thilo Muth

(2024) bioRxiv.
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- Journal Article
- A1
- open access
Proceedings of the EuBIC-MS developers meeting 2023

Pedro Beltrao, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Tanja Holstein (UGent) , Tobias Kockmann, Alireza Nameni (UGent) , Christian Panse, Ralph Schlapbach, Ludwig Lautenbacher, Matthias Mattanovich, et al.

(2024) JOURNAL OF PROTEOMICS. 305.
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- Book Chapter
Bioinformatic workflows for metaproteomics

Tanja Holstein (UGent) and Thilo Muth

(2024) Metaproteomics : methods and protocols. In Methods in molecular biology (MIMB) 2820. p.187-213
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- Miscellaneous
- open access
The Peptonizer2000 : graphical model based taxonomic identifications of metaproteomic samples

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) and Thilo Muth

(2024) BIORXIV.
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- Miscellaneous
PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2024) BIORXIV.
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- Journal Article
- A1
- open access
PepGM : a probabilistic graphical model for taxonomic inference of viral proteome samples with associated confidence scores

Tanja Holstein (UGent) , Franziska Kistner, Lennart Martens (UGent) and Thilo Muth

(2023) BIOINFORMATICS. 39(5).

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