Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Arthur Declercq

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0002-9376-1399

Add to list
- Journal Article
- A1
- open access
iDeepLC : chemical structure information yields improved retention time prediction of peptides with unseen modifications

Alireza Nameni (UGent) , Arthur Declercq (UGent) , Ralf Gabriels (UGent) , Robbe Devreese (UGent) , Sven Degroeve (UGent) , Amélie De Maesschalck (UGent) , Maarten Dhaenens (UGent) , Cristina Chiva, Eduard Sabidó, Lennart Martens (UGent) , et al.

(2026) ANALYTICAL CHEMISTRY. 98(24). p.17707-17717
Add to list
- Journal Article
- A1
- open access
Transfer learning in DeepLC improves LC retention time prediction across substantially different modifications and setups

Robbin Bouwmeester (UGent) , Alireza Nameni (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Kevin Velghe (UGent) , Vladimir Gorshkov, Pelayo A. Penanes, Frank Kjeldsen, Magali Rompais, Christine Carapito, et al.

(2026) NATURE COMMUNICATIONS. 17(1).
Add to list
- Book Chapter
High-coverage immunopeptidomics using timsTOF mass spectrometers with thunder-DDA-PASEF boosted by MS2Rescore

David Gomez-Zepeda, Julian Beyrle, Annica Preikschat, Arthur Declercq (UGent) , Yannic Chen, Ralf Gabriels (UGent) , Lennart Martens (UGent) , Ute Distler and Stefan Tenzer

(2025) Immunoproteomics : methods and protocols. In Methods in molecular biology (MIMB) 2980. p.115-155
Add to list
- Journal Article
- A1
- open access
MHCquant2 refines immunopeptidomics tumor antigen discovery

Jonas Scheid, Steffen Lemke, Naomi Hoenisch-Gravel, Anna Dengler, Timo Sachsenberg, Arthur Declercq (UGent) , Ralf Gabriels (UGent) , Jens Bauer, Marcel Wacker, Leon Bichmann, et al.

(2025) GENOME BIOLOGY. 26(1).
Add to list
- PhD Thesis
Epitope Odyssey : data-driven tools to extend the known immunopeptide universe

Arthur Declercq (UGent)

(2025)
Add to list
- Journal Article
- A1
- open access
Collisional cross-section prediction for multiconformational peptide ions with IM2Deep

Robbe Devreese (UGent) , Alireza Nameni (UGent) , Arthur Declercq (UGent) , Emmy Terryn, Ralf Gabriels (UGent) , Francis Impens (UGent) , Kris Gevaert (UGent) , Lennart Martens (UGent) and Robbin Bouwmeester (UGent)

(2025) ANALYTICAL CHEMISTRY. 97(28). p.15113-15121
Add to list
- Journal Article
- A1
- open access
Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

Patrick Willems (UGent) , Fabien Henri Thery (UGent) , Laura Van Moortel (UGent) , Margaux De Meyer (UGent) , An Staes (UGent) , Adillah Gul (UGent) , Lyudmila Kovalchuke (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Robbin Bouwmeester (UGent) , et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.2141-2151
Add to list
- Journal Article
- A1
- open access
TIMS2Rescore : a data dependent acquisition-parallel accumulation and serial fragmentation-optimized data-driven rescoring pipeline based on MS2Rescore

Arthur Declercq (UGent) , Robbe Devreese (UGent) , Jonas Scheid, Caroline Jachmann (UGent) , Tim Van Den Bossche (UGent) , Annica Preikschat, David Gomez-Zepeda, Jeewan Babu Rijal, Aurelie Hirschler, Jonathan R. Krieger, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(3). p.1067-1076
Add to list
- Journal Article
- A1
- open access
Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links

Arslan Siraj, Robbin Bouwmeester (UGent) , Arthur Declercq (UGent) , Luisa Welp, Aleksandar Chernev, Alexander Wulf, Henning Urlaub, Lennart Martens (UGent) , Sven Degroeve (UGent) , Oliver Kohlbacher, et al.

(2024) PROTEOMICS. 24(8).
Add to list
- Book Chapter
- open access
Bioinformatics pipeline for processing single-cell data

Arthur Declercq (UGent) , Nina Demeulemeester, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2024) Mass spectrometry based single cell proteomics. In Methods in molecular biology (MIMB) 2817. p.221-239

1
2

Next →