Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Simon Van de Vyver

Faculty of Sciences > Department of Mathematics, Computer Science and Statistics

ORCID iD: 0009-0009-7810-2174

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Direct construction of sparse suffix arrays with Libsais

Simon Van de Vyver (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) BMC BIOINFORMATICS. 26(1).
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b-move : faster lossless approximate pattern matching in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, Travis Gagie and Jan Fostier (UGent)

(2025) ALGORITHMS FOR MOLECULAR BIOLOGY. 20(1).
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- Miscellaneous
Direct construction of sparse suffix arrays with Libsais

Simon Van de Vyver (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025)
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Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande Moortele (UGent) , Bram Devlaminck, Simon Van de Vyver (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.949-954
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The Peptonizer2000 : bringing confidence to metaproteomics

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Simon Van de Vyver (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Thilo Muth

(2024) bioRxiv.
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B-move : faster bidirectional character extensions in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, T. Gagie and Jan Fostier (UGent)

(2024) 24TH INTERNATIONAL WORKSHOP ON ALGORITHMS IN BIOINFORMATICS, WABI 2024. In Leibniz International Proceedings in Informatics (LIPIcs) 312. p.1-18