Sander Willems

Miscellaneous
open access

Analyzing data independent acquisition mass spectrometry with noiseless ion-networks

Sander Willems, Simon Daled (UGent) , Bart Van Puyvelde (UGent) , Laura De Clerck (UGent) , Sofie Vande Casteele (UGent) , Filip Van Nieuwerburgh (UGent) , Dieter Deforce (UGent) and Maarten Dhaenens (UGent)

(2022) BioRXiv.

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Journal Article
A2
open access

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Bart Van Puyvelde (UGent) , Katleen Van Uytfanghe (UGent) , Olivier Tytgat, Laurence Van Oudenhove, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Simon Daled (UGent) , Tim Van Den Bossche (UGent) , Pathmanaban Ramasamy (UGent) , Sigrid Verhelst (UGent) , et al.

(2021) JACS AU. 1(6). p.750-765

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Journal Article
A2
open access

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Sigrid Verhelst (UGent) , Laura De Clerck (UGent) , Sander Willems, Bart Van Puyvelde (UGent) , Simon Daled (UGent) , Dieter Deforce (UGent) and Maarten Dhaenens (UGent)

(2020) METHODSX. 7.

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PhD Thesis

Break it to make it : from fragmented information to computational coherency in mass spectrometry based proteomics

Sander Willems

(2020)

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Journal Article
A1
open access

Removing the hidden data dependency of DIA with predicted spectral libraries

Bart Van Puyvelde (UGent) , Sander Willems, Ralf Gabriels (UGent) , Simon Daled (UGent) , Laura De Clerck (UGent) , Sofie Vande Casteele (UGent) , An Staes (UGent) , Francis Impens (UGent) , Dieter Deforce (UGent) , Lennart Martens (UGent) , et al.

(2020) PROTEOMICS. 20(3-4).

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Journal Article
A1
open access

Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human

Laura De Clerck (UGent) , Jasin Taelman, Mina Popovic, Sander Willems, Margot Van der Jeught (UGent) , Björn Heindryckx (UGent) , Petra De Sutter (UGent) , Hendrik Marks, Dieter Deforce (UGent) and Maarten Dhaenens (UGent)

(2019) SCIENTIFIC REPORTS. 9.

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hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

Laura De Clerck (UGent) , Sander Willems, Roberta Noberini, Camilla Restellini, Bart Van Puyvelde (UGent) , Simon Daled (UGent) , Tiziana Bonaldi, Dieter Deforce (UGent) and Maarten Dhaenens (UGent)

(2019) JOURNAL OF PROTEOME RESEARCH. 18(11). p.3840-3849

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Miscellaneous
open access

Proceedings of the EuBIC Winter School 2019

Dominik Kopczynski, Wout Bittremieux, David Bouyssié, Viktoria Dorfer, Marie Locard-Paulet, Bart Van Puyvelde (UGent) , Veit Schwämmle, Alessio Soggiu, Sander Willems and Julian Uszkoreit

(2019) EUPA OPEN PROTEOMICS. 22-23. p.4-7

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Integrative proteomic profiling reveals PRC2-dependent epigenetic crosstalk maintains ground-state pluripotency

Guido van Mierlo, René AM Dirks, Laura De Clerck (UGent) , Arie B Brinkman, Michelle Huth, Susan L Kloet, Nehmé Saksouk, Leonie I Kroeze, Sander Willems, Matthias Farlik, et al.

(2019) CELL STEM CELL. 24(1). p.123-137

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Journal Article
A1
open access

Forensic tri-allelic SNP genotyping using nanopore sequencing

Senne Cornelis (UGent) , Yannick Gansemans (UGent) , Ann-Sophie Vander Plaetsen, Jana Weymaere, Sander Willems, Dieter Deforce (UGent) and Filip Van Nieuwerburgh (UGent)

(2019) FORENSIC SCIENCE INTERNATIONAL-GENETICS. 38. p.204-210

Academic Bibliography

Sander Willems

Analyzing data independent acquisition mass spectrometry with noiseless ion-networks

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Break it to make it : from fragmented information to computational coherency in mass spectrometry based proteomics

Removing the hidden data dependency of DIA with predicted spectral libraries

Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human

hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

Proceedings of the EuBIC Winter School 2019

Integrative proteomic profiling reveals PRC2-dependent epigenetic crosstalk maintains ground-state pluripotency

Forensic tri-allelic SNP genotyping using nanopore sequencing

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