Davy Maddelein

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Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone (UGent) , Pathmanaban Ramasamy (UGent) , Jasper Zuallaert (UGent) , Robbin Bouwmeester (UGent) , Berre Van Moer (UGent) , Davy Maddelein (UGent) , Demet Turan (UGent) , Niels Hulstaert (UGent) , Hannah Eeckhaut (UGent) , Elien Vandermarliere (UGent) , et al.

(2021) NATURE COMMUNICATIONS. 12(1).

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MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

Surya Gupta (UGent) , Veronic De Puysseleyr, José Van Der Heyden (UGent) , Davy Maddelein (UGent) , Irma Lemmens (UGent) , Sam Lievens (UGent) , Sven Degroeve (UGent) , Jan Tavernier (UGent) and Lennart Martens (UGent)

(2017) BIOINFORMATICS. 33(9). p.1424-1425

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Up-to-date workflow for plant (phospho)proteomics identifies differential drought-responsive phosphorylation events in maize leaves

Lam Dai Vu (UGent) , Elisabeth Stes (UGent) , Michiel Van Bel (UGent) , Hilde Nelissen (UGent) , Davy Maddelein (UGent) , Dirk Inzé (UGent) , Frederik Coppens (UGent) , Lennart Martens (UGent) , Kris Gevaert (UGent) and Ive De Smet (UGent)

(2016) JOURNAL OF PROTEOME RESEARCH. 15(12). p.4304-4317

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Pladipus enables universal distributed computing in proteomics bioinformatics

Kenneth Verheggen (UGent) , Davy Maddelein (UGent) , Niels Hulstaert (UGent) , Lennart Martens (UGent) , Harald Barsnes and Marc Vaudel

(2015) JOURNAL OF PROTEOME RESEARCH. 15(3). p.707-712

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MS²PIP prediction server : compute and visualize MS² peak intensity predictions for CID and HCD fragmentation

Sven Degroeve (UGent) , Davy Maddelein (UGent) and Lennart Martens (UGent)

(2015) NUCLEIC ACIDS RESEARCH. 43(W1). p.W326-W330

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The iceLogo web server and SOAP service for determining protein consensus sequences

Davy Maddelein (UGent) , Niklaas Colaert (UGent) , Iain Buchanan (UGent) , Niels Hulstaert (UGent) , Kris Gevaert (UGent) and Lennart Martens (UGent)

(2015) NUCLEIC ACIDS RESEARCH. 43(W1). p.W543-W546

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A decoy-free approach to the identification of peptides

Giulia Gonnelli (UGent) , Michiel Stock (UGent) , Jan Verwaeren (UGent) , Davy Maddelein (UGent) , Bernard De Baets (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2015) JOURNAL OF PROTEOME RESEARCH. 14(4). p.1792-1798

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PepShell : visualization of conformational proteomics data

Elien Vandermarliere (UGent) , Davy Maddelein (UGent) , Niels Hulstaert (UGent) , Elisabeth Stes (UGent) , Michela Di Michele (UGent) , Kris Gevaert (UGent) , Edgar Jacoby, Dirk Brehmer and Lennart Martens (UGent)

(2015) JOURNAL OF PROTEOME RESEARCH. 14(4). p.1987-1990

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The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events

Niklaas Colaert (UGent) , Davy Maddelein (UGent) , Francis Impens (UGent) , Petra Van Damme (UGent) , Kim Plasman (UGent) , Kenny Helsens (UGent) , Niels Hulstaert (UGent) , Joël Vandekerckhove (UGent) , Kris Gevaert (UGent) and Lennart Martens (UGent)

(2013) NUCLEIC ACIDS RESEARCH. 41(D1). p.D333-D337

Academic Bibliography

Davy Maddelein

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

Up-to-date workflow for plant (phospho)proteomics identifies differential drought-responsive phosphorylation events in maize leaves

Pladipus enables universal distributed computing in proteomics bioinformatics

MS²PIP prediction server : compute and visualize MS² peak intensity predictions for CID and HCD fragmentation

The iceLogo web server and SOAP service for determining protein consensus sequences

A decoy-free approach to the identification of peptides

PepShell : visualization of conformational proteomics data

The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events

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