Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Dries Decap

Faculty of Engineering and Architecture > Department of Information technology

ORCID iD: 0000-0002-1710-5541

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BLSSpeller to discover novel regulatory motifs in maize

Razgar Seyed Rahmani, Dries Decap (UGent) , Jan Fostier (UGent) and Kathleen Marchal (UGent)

(2022) DNA RESEARCH. 29(4).
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Halvade somatic : somatic variant calling with Apache Spark

Dries Decap (UGent) , Louise de Schaetzen van Brienen (UGent) , Maarten Larmuseau (UGent) , Pascal Costanza, Charlotte Herzeel, Roel Wuyts, Kathleen Marchal (UGent) and Jan Fostier (UGent)

(2022) GIGASCIENCE. 11.
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Multithreaded variant calling in elPrep 5

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) , Roel Wuyts and Wilfried Verachtert

(2021) PLOS ONE. 16(2).
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IAMBEE : a web-service for the identification of adaptive pathways from parallel evolved clonal populations

Camilo Andrés Pérez Romero (UGent) , Bram Weytjens (UGent) , Dries Decap (UGent) , Toon Swings, Jan Michiels, Dries De Maeyer (UGent) and Kathleen Marchal (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(W1). p.W151-W157
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elPrep 4 : a multithreaded framework for sequence analysis

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) and Wilfried Verachtert

(2019) PLOS ONE. 14(2). p.1-16
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- PhD Thesis
- open access
Hadoop-based solutions for variant calling and variant analysis

Dries Decap (UGent)

(2017)
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Halvade-RNA : parallel variant calling from transcriptomic data using MapReduce

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2017) PLOS ONE. 12(3).
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- Conference Paper
- P1
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Performance analysis of a parallel, multi-node pipeline for DNA sequencing

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2016) PARALLEL PROCESSING AND APPLIED MATHEMATICS, PPAM 2015, PT II. In Lecture Notes in Computer Science 9574. p.233-242
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- Journal Article
- A1
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BLSSpeller : exhaustive comparative discovery of conserved cis-regulatory elements

Dieter De Witte (UGent) , Jan Van de Velde (UGent) , Dries Decap (UGent) , Michiel Van Bel (UGent) , P. Audenaert (UGent) , Piet Demeester (UGent) , Bart Dhoedt (UGent) , Klaas Vandepoele (UGent) and Jan Fostier (UGent)

(2015) BIOINFORMATICS. 31(23). p.3758-3766
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elPrep: high-performance preparation of sequence alignment/map files for variant calling

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) and Joke Reumers

(2015) PLOS ONE. 10(7).

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