Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Shira Houwenhuyse

Faculty of Sciences > Department of Biochemistry and microbiology

ORCID iD: 0000-0002-5735-2168

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Investigating the core microbiome concept : Daphnia as a case study

Aditi Gurung, Martijn Callens, François Massol, Caroline Souffreau, Shinjini Mukherjee, Shira Houwenhuyse (UGent) , Robby Stoks, Luc De Meester and Ellen Decaestecker

(2025) ENVIRONMENTAL MICROBIOME. 21(1).
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Natural and lab-derived microbiomes differentially shape stressor interaction patterns of Daphnia magna

Shira Houwenhuyse (UGent) , Lore Bulteel, Isabel Vanoverberghe, Anna Krzynowek, Marlies Van de Maele, Manon Coone, Silke Van den Wyngaert, Arne Sinnesael, Robby Stoks and Ellen Decaestecker

(2025) ISME JOURNAL. 19(1).
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How does co-occurrence of Daphnia species affect their gut microbiome?

Shira Houwenhuyse (UGent) , François Massol, Emilie Macke, Luc De Meester, Isabel Vanoverberghe, Robby Stoks and Ellen Decaestecker

(2025) OIKOS. 2025(3).
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The effect of hypoxia on Daphnia magna performance and its associated microbial and bacterioplankton community : a scope for phenotypic plasticity and microbiome community interactions upon environmental stress?

Manon Coone, Isabel Vanoverberghe, Shira Houwenhuyse (UGent) , Chris Verslype and Ellen Decaestecker

(2023) FRONTIERS IN ECOLOGY AND EVOLUTION. 11.
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Comparison between the gut bacterial community of laboratory cultured and wild <i>Daphnia</i>

Shira Houwenhuyse (UGent) , Martijn Callens, Lore Bulteel and Ellen Decaestecker

(2023) FEMS MICROBIOLOGY ECOLOGY. 99(11).
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Activity-based protein profiling : functional proteomics for novel enzyme discovery in marine bacteria

Lasse De Cock (UGent) , Shira Houwenhuyse (UGent) , Hermen Overkleeft, Anne Willems (UGent) and Bart Devreese (UGent)

(2023) EFB green deal biotechnology, Abstracts.
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The role of microbiome and genotype in Daphnia magna upon parasite re-exposure

Lore Bulteel, Shira Houwenhuyse (UGent) , Steven A. J. Declerck and Ellen Decaestecker

(2021) GENES. 12(1).
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Locally adapted gut microbiomes mediate host stress tolerance

Shira Houwenhuyse (UGent) , Robby Stoks, Shinjini Mukherjee and Ellen Decaestecker

(2021) ISME JOURNAL. 15(8). p.2401-2414
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Human impact on symbioses between aquatic organisms and microbes

Willem Stock (UGent) , Martijn Callens (UGent) , Shira Houwenhuyse (UGent) , Ruben Schols, Naina Goel, Mallon Coone, Charlotte Theys, Vienna Delnat, Alice Boudry, Ester M. Eckert, et al.

(2021) AQUATIC MICROBIAL ECOLOGY. 87. p.113-138
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Daphnia magna tolerance to toxic cyanobacteria in the presence of an opportunistic infection within an evolutionary perspective

Alice Boudry, Sarah Devliegere, Shira Houwenhuyse (UGent) , Lucas Clarysse, Emilie Macke, Isabel Vanoverberghe and Ellen Decaestecker

(2020) BELGIAN JOURNAL OF ZOOLOGY. 150. p.81-93

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