Niels Hulstaert

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Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone (UGent) , Pathmanaban Ramasamy (UGent) , Jasper Zuallaert (UGent) , Robbin Bouwmeester (UGent) , Berre Van Moer (UGent) , Davy Maddelein (UGent) , Demet Turan (UGent) , Niels Hulstaert (UGent) , Hannah Eeckhaut (UGent) , Elien Vandermarliere (UGent) , et al.

(2021) NATURE COMMUNICATIONS. 12(1).

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DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Niels Hulstaert (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2021) NATURE METHODS. 18(11). p.1363-+

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COSS : a fast and user-friendly tool for spectral library searching

Genet Abay Shiferaw, Elien Vandermarliere (UGent) , Niels Hulstaert (UGent) , Ralf Gabriels (UGent) , Lennart Martens (UGent) and Pieter-Jan Volders (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(7). p.2786-2793

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Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban Ramasamy (UGent) , Demet Turan (UGent) , Natalia Tichshenko (UGent) , Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Wim Vranken and Lennart Martens (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3478-3486

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ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Niels Hulstaert (UGent) , Jim Shofstahl, Timo Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens (UGent) and Yasset Perez-Riverol

(2020) JOURNAL OF PROTEOME RESEARCH. 19(1). p.537-542

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Perspective: Essential study quality descriptors for data from nutritional epidemiologic research

Chen Yang, Mariona Pinart, Patrick Kolsteren (UGent) , John Van Camp (UGent) , Nathalie De Cock (UGent) , Katharina Nimptsch, Tobias Pischon, Eamon Laird, Giuditta Perozzi, Raffaella Canali, et al.

(2017) ADVANCES IN NUTRITION. 8(5). p.639-651

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moFF : a robust and automated approach to extract peptide ion intensities

Andrea Argentini (UGent) , Ludger Goeminne, Kenneth Verheggen (UGent) , Niels Hulstaert (UGent) , An Staes (UGent) , Lieven Clement (UGent) and Lennart Martens (UGent)

(2016) NATURE METHODS. 13(12). p.962-965

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Xilmass: a new approach toward the identification of cross-linked peptides

Sule Yilmaz-Rumpf (UGent) , Friedel Drepper, Niels Hulstaert (UGent) , Maša Černič, Kris Gevaert (UGent) , Anastassios Economou, Bettina Warscheid, Lennart Martens (UGent) and Elien Vandermarliere (UGent)

(2016) ANALYTICAL CHEMISTRY. 88(20). p.9949-9957

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A pipeline for differential proteomics in unsequenced species

Sule Yilmaz-Rumpf (UGent) , Bjorn Victor, Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Harald Barsnes, Sven Degroeve (UGent) , Surya Gupta (UGent) , Adriaan Sticker, Sarah Gabriël (UGent) , Pierre Dorny (UGent) , et al.

(2016) JOURNAL OF PROTEOME RESEARCH. 15(6). p.1963-1970

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Pladipus enables universal distributed computing in proteomics bioinformatics

Kenneth Verheggen (UGent) , Davy Maddelein (UGent) , Niels Hulstaert (UGent) , Lennart Martens (UGent) , Harald Barsnes and Marc Vaudel

(2015) JOURNAL OF PROTEOME RESEARCH. 15(3). p.707-712

Academic Bibliography

Niels Hulstaert

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

DeepLC can predict retention times for peptides that carry as-yet unseen modifications

COSS : a fast and user-friendly tool for spectral library searching

Scop3P : a comprehensive resource of human phosphosites within their full context

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Perspective: Essential study quality descriptors for data from nutritional epidemiologic research

moFF : a robust and automated approach to extract peptide ion intensities

Xilmass: a new approach toward the identification of cross-linked peptides

A pipeline for differential proteomics in unsequenced species

Pladipus enables universal distributed computing in proteomics bioinformatics

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