Nicolás Manosalva Pérez

PhD Thesis

Exploring the cis-regulatory landscape of plants to unravel gene regulatory networks

Nicolás Manosalva Pérez (UGent)

(2024)

Journal Article
A1
open access

MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva Pérez (UGent) , Camilla Ferrari (UGent) , Julia Engelhorn, Thomas Depuydt, Hilde Nelissen (UGent) , Thomas Hartwig and Klaas Vandepoele (UGent)

(2024) PLANT JOURNAL. 117. p.280-301

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Book Chapter
open access

Prediction of transcription factor regulators and gene regulatory networks in tomato using binding site information

Nicolás Manosalva Pérez (UGent) and Klaas Vandepoele (UGent)

(2023) Plant gene regulatory networks : methods and protocols. In Methods in Molecular Biology 2698. p.323-349

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Journal Article
A1
open access

Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots

Li Liu (UGent) , Michel Heidecker, Thomas Depuydt, Nicolás Manosalva Pérez (UGent) , Martin Crespi, Thomas Blein and Klaas Vandepoele (UGent)

(2023) PLANT PHYSIOLOGY. 193(3). p.1933-1953

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Journal Article
A1
open access

Rhizogenic agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development

Lore Gryffroy, Evi Ceulemans, Nicolás Manosalva Pérez (UGent) , Jhon Jairo Venegas Molina (UGent) , Ana Jaramillo (UGent) , Savio D. Rodrigues, Liesbeth De Milde (UGent) , Veronique Jonckheere (UGent) , Marc Van Montagu (UGent) , Barbara De Coninck (UGent) , et al.

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(3).

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Journal Article
A1
open access

MINI-EX : integrative inference of single-cell gene regulatory networks in plants

Camilla Ferrari (UGent) , Nicolás Manosalva Pérez (UGent) and Klaas Vandepoele (UGent)

(2022) MOLECULAR PLANT. 15(11). p.1807-1824

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Journal Article
A1
open access

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez (UGent) , et al.

(2022) NUCLEIC ACIDS RESEARCH. 50(D1). p.D165-D173

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Journal Article
A1
open access

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolás Manosalva Pérez (UGent) , Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, Chang Liu, Xiaoqi Feng, Runxuan Zhang, et al.

(2021) JOURNAL OF EXPERIMENTAL BOTANY. 72(22). p.7927-7941

Academic Bibliography

Nicolás Manosalva Pérez

Exploring the cis-regulatory landscape of plants to unravel gene regulatory networks

MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Prediction of transcription factor regulators and gene regulatory networks in tomato using binding site information

Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots

Rhizogenic agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development

MINI-EX : integrative inference of single-cell gene regulatory networks in plants

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

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