Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Nicolás Manosalva Pérez

Faculty of Sciences > Department of Plant Biotechnology and Bioinformatics

ORCID iD: 0000-0002-1559-7802

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- Journal Article
- open access
MINI‐AC: inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva Pérez (UGent) , Camilla Ferrari (UGent) , Julia Engelhorn, Thomas Depuydt (UGent) , Hilde Nelissen (UGent) , Thomas Hartwig and Klaas Vandepoele (UGent)

(2023) The Plant Journal.
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- Book Chapter
Prediction of transcription factor regulators and gene regulatory networks in tomato using binding site information

Nicolás Manosalva Pérez (UGent) and Klaas Vandepoele (UGent)

(2023) Plant gene regulatory networks : methods and protocols. In Methods in Molecular Biology 2698. p.323-349
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Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots

Li Liu (UGent) , Michel Heidecker, Thomas Depuydt (UGent) , Nicolás Manosalva Pérez (UGent) , Martin Crespi, Thomas Blein and Klaas Vandepoele (UGent)

(2023) PLANT PHYSIOLOGY. 193(3). p.1933-1953
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Rhizogenic agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development

Lore Gryffroy (UGent) , Evi Ceulemans (UGent) , Nicolás Manosalva Pérez (UGent) , Jhon Jairo Venegas Molina (UGent) , Ana Jaramillo (UGent) , Savio D. Rodrigues, Liesbeth De Milde (UGent) , Veronique Jonckheere (UGent) , Marc Van Montagu (UGent) , Barbara De Coninck (UGent) , et al.

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(3).
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- Journal Article
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MINI-EX : integrative inference of single-cell gene regulatory networks in plants

Camilla Ferrari (UGent) , Nicolás Manosalva Pérez (UGent) and Klaas Vandepoele (UGent)

(2022) MOLECULAR PLANT. 15(11). p.1807-1824
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JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez (UGent) , et al.

(2022) NUCLEIC ACIDS RESEARCH. 50(D1). p.D165-D173
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Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolás Manosalva Pérez (UGent) , Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, Chang Liu, Xiaoqi Feng, Runxuan Zhang, et al.

(2021) JOURNAL OF EXPERIMENTAL BOTANY. 72(22). p.7927-7941