Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Robbin Bouwmeester

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

Work address: Technologiepark-Zwijnaarde 75, FSVMII
9052 Zwijnaarde
Email: Robbin.Bouwmeester@UGent.be
ORCID iD: 0000-0001-6807-7029

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- Miscellaneous
Machine learning on large-scale proteomics data identifies tissue- and cell type-specific proteins

Tine Claeys (UGent) , Maxime Menu, Robbin Bouwmeester (UGent) , Kris Gevaert (UGent) and Lennart Martens (UGent)

(2022)
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- Miscellaneous
- open access
ProteomicsML: An Online Platform for Community-Curated Datasets and Tutorials for Machine Learning in Proteomics

Tobias Rehfeldt, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Siegfried Gessulat, Benjamin Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno and Eric Deutsch

(2022)
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- Miscellaneous
- open access
psm_utils: A high level Python API for parsing and handling peptide-spectrum-matches and proteomics search results

Ralf Gabriels (UGent) , Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2022)
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- Miscellaneous
- open access
FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data

Mikaela Koutrouli, Pau Piera Líndez, Robbin Bouwmeester (UGent) , Lennart Martens (UGent) and Lars Juhl Jensen

(2022)
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- Journal Article
- A2
- open access
How sticky are our proteins? Quantifying hydrophobicity of the human proteome

Juami Hermine Mariama van Gils, Dea Gogishvili, Jan van Eck, Robbin Bouwmeester (UGent) , Erik van Dijk and Sanne Abeln

(2022) BIOINFORMATICS ADVANCES. 2(1).
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- Journal Article
- A1
- open access
Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator

Genet Abay Shiferaw (UGent) , Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Tim Van Den Bossche (UGent) , Elien Vandermarliere (UGent) , Lennart Martens (UGent) and Pieter-Jan Volders (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(5). p.1365-1370
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- Journal Article
- A1
- open access
MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Aurélie Hirschler, Christine Carapito, Sven Degroeve (UGent) , Lennart Martens (UGent) and Ralf Gabriels (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).
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- Miscellaneous
- open access
Ionbot : a novel, innovative and sensitive machine learning approach to LC-MS/MS peptide identification

Sven Degroeve (UGent) , Ralf Gabriels (UGent) , Kevin Velghe (UGent) , Robbin Bouwmeester (UGent) , Natalia Tichshenko (UGent) and Lennart Martens (UGent)

(2022) BIORXIV.
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- Journal Article
- A1
- open access
Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone (UGent) , Pathmanaban Ramasamy (UGent) , Jasper Zuallaert (UGent) , Robbin Bouwmeester (UGent) , Berre Van Moer (UGent) , Davy Maddelein (UGent) , Demet Turan (UGent) , Niels Hulstaert (UGent) , Hannah Eeckhaut (UGent) , Elien Vandermarliere (UGent) , et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- Journal Article
- A1
- open access
DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Niels Hulstaert (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2021) NATURE METHODS. 18(11). p.1363-+

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