prof. dr. Arnout Van Messem

Journal Article
open access

How to make sense of 3D representations for plant phenotyping: a compendium of processing and analysis techniques

Negin Harandi (UGent) , Breght Vandenberghe (UGent) , Joris Vankerschaver (UGent) , Stephen Depuydt (UGent) and Arnout Van Messem (UGent)

(2023) Plant Methods. 19(1).

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CRISPR-Cas-Docker : web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins

Homin Park (UGent) , Jong Bum Won, Yunseol Park (UGent) , Esla Timothy Anzaku (UGent) , Joris Vankerschaver (UGent) , Arnout Van Messem (UGent) , Wesley De Neve (UGent) and Hyunjin Shim

(2023) BMC BIOINFORMATICS. 24(1).

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Parameter estimation for models of chemical reaction networks from experimental data of reaction rates

Manvel Gasparyan (UGent) , Arnout Van Messem (UGent) and Shodhan Rao (UGent)

(2023) INTERNATIONAL JOURNAL OF CONTROL. 96(2). p.392-407

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In silico optimization of RNA-protein interactions for CRISPR-Cas13-based antimicrobials

Homin Park (UGent) , Yunseol Park, Urta Berani, Eunkyu Bang (UGent) , Joris Vankerschaver (UGent) , Arnout Van Messem (UGent) , Wesley De Neve (UGent) and Hyunjin Shim

(2022) BIOLOGY DIRECT. 17(1).

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MP-Net : deep learning-based segmentation for fluorescence microscopy images of microplastics isolated from clams

Homin Park (UGent) , Sanghyeon Park, Maria Krishna de Guzman (UGent) , Ji Yeon Baek, Tanja Cirkovic Velickovic (UGent) , Arnout Van Messem (UGent) and Wesley De Neve (UGent)

(2022) PLOS ONE. 17(6).

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Rethinking protein drug design with highly accurate structure prediction of anti-CRISPR proteins

Homin Park (UGent) , Yunseol Park, Joris Vankerschaver (UGent) , Arnout Van Messem (UGent) , Wesley De Neve (UGent) and Hyunjin Shim

(2022) PHARMACEUTICALS. 15(3).

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Conference Paper
C1
open access

Evaluating adversarial attacks on ImageNet : a reality check on misclassification classes

Utku Özbulak, Maura Pintor, Arnout Van Messem (UGent) and Wesley De Neve (UGent)

(2021) NeurIPS 2021 : workshop : ImageNet : past, present, and future, Proceedings.

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Selection of source images heavily influences the effectiveness of adversarial attacks

Utku Özbulak, Esla Timothy Anzaku (UGent) , Wesley De Neve (UGent) and Arnout Van Messem (UGent)

(2021) BMVC, the 32nd British Machine Vision Conference, Proceedings.

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Conference Paper
C1
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3-D deep learning-based item classification for belt conveyors targeting packaging and logistics

Homin Park (UGent) , Byungkon Kang, Arnout Van Messem (UGent) and Wesley De Neve (UGent)

(2021) Pattern recognition, ICPR international workshops and challenges, Proceedings, Part VI. In Lecture Notes in Computer Science 12666. p.578-591

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Developing a segmentation model for microscopic images of microplastics isolated from clams

Ji Yeon Baek, Maria Krishna de Guzman (UGent) , Homin Park (UGent) , Sanghyeon Park, Boyeon Shin, Tanja Cirkovic Velickovic (UGent) , Arnout Van Messem (UGent) and Wesley De Neve (UGent)

(2021) Pattern recognition, ICPR international workshops and challenges, Proceedings, Part VI. In Lecture Notes in Computer Science 12666. p.86-97

Academic Bibliography

prof. dr. Arnout Van Messem

How to make sense of 3D representations for plant phenotyping: a compendium of processing and analysis techniques

CRISPR-Cas-Docker : web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins

Parameter estimation for models of chemical reaction networks from experimental data of reaction rates

In silico optimization of RNA-protein interactions for CRISPR-Cas13-based antimicrobials

MP-Net : deep learning-based segmentation for fluorescence microscopy images of microplastics isolated from clams

Rethinking protein drug design with highly accurate structure prediction of anti-CRISPR proteins

Evaluating adversarial attacks on ImageNet : a reality check on misclassification classes

Selection of source images heavily influences the effectiveness of adversarial attacks

3-D deep learning-based item classification for belt conveyors targeting packaging and logistics

Developing a segmentation model for microscopic images of microplastics isolated from clams

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