Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Benjamin Rombaut

Faculty of Sciences > Department of Mathematics, Computer Science and Statistics

ORCID iD: 0000-0002-4022-715X

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- Journal Article
- A1
- open access
Scalable analysis of whole slide spatial proteomics with Harpy

Benjamin Rombaut (UGent) , Arne Defauw (UGent) , Frank Vernaillen (UGent) , Julien Mortier (UGent) , Evelien Van Hamme (UGent) , Sofie Van Gassen (UGent) , Ruth Seurinck (UGent) and Yvan Saeys (UGent)

(2026) BIOINFORMATICS. 42(3).
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- PhD Thesis
Expert-guided analysis of spatial omics data

Benjamin Rombaut (UGent)

(2025)
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- Journal Article
- A1
- open access
SpatialData : an open and universal data framework for spatial omics

Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B. Shrestha, et al.

(2025) NATURE METHODS. 22(1). p.58-62
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- Miscellaneous
1st SpatialData Developer Workshop

Luca Marconato, Wouter-Michiel Vierdag, Kevin Yamauchi, Clarence Mah, Helena Crowell, Quentin Blampey, Benjamin Rombaut (UGent) , Mark S Keller, Lotte Pollaris (UGent) , Estella Yixing Dong, et al.

(2024) BioHackrXiv.
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- Miscellaneous
VIB Hackathon on spatial omics tools and methods

Benjamin Rombaut (UGent) , Lotte Pollaris (UGent) , Chananchida Sang-aram (UGent) , Michiel Ver Cruysse (UGent) , Robrecht Cannoodt (UGent) , Frank Vernaillen (UGent) , Arne Defauw (UGent) , Julien Mortier (UGent) , Mayar Ali, Kresimir Bestak, et al.

(2024)
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- Miscellaneous
- open access
SPArrOW : a flexible, interactive and scalable pipeline for spatial transcriptomics analysis

Lotte Pollaris (UGent) , Bavo Vanneste (UGent) , Benjamin Rombaut (UGent) , Arne Defauw (UGent) , Frank Vernaillen (UGent) , Julien Mortier (UGent) , Wout Vanhenden, Liesbet Martens (UGent) , Tinne THONE (UGent) , Jean-François Hastir (UGent) , et al.

(2024) bioRxiv.
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- Journal Article
- A1
- open access
Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools

Artuur Couckuyt, Benjamin Rombaut (UGent) , Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2024) BIOINFORMATICS. 40(4).
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- Journal Article
- A1
- open access
A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma

Joanna Pozniak, Dennis Pedri, Ewout Landeloos, Yannick Van Herck, Asier Antoranz, Lukas Vanwynsberghe, Ada Nowosad, Niccolo Roda, Samira Makhzami, Greet Bervoets, et al.

(2024) CELL. 187(1). p.166-183
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- Conference Paper
- C1
- open access
BioSegment : active learning segmentation for 3D electron microscopy imaging

Benjamin Rombaut (UGent) , Joris Roels (UGent) and Yvan Saeys (UGent)

(2022) Workshop on Interactive Adaptive Learning co-located with European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD 2022), Proceedings. In CEUR Workshop Proceedings 3259. p.7-26