Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. Wouter Saelens

Faculty of Sciences > Department of Biomedical molecular biology

ORCID iD: 0000-0002-7114-6248

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The unfolded protein sensor IRE1 is essential for homeostatic dendritic cell maturation

Victor Bosteels, Sandra Maréchal (UGent) , Eva Cloots (UGent) , Farzaneh Fayazpour (UGent) , Clint De Nolf (UGent) , Laurien Van Heddegem, Simon Tavernier (UGent) , Sofie Rennen (UGent) , Seraja Amstelveen (UGent) , Liesbet Martens (UGent) , et al.

(2026) NATURE COMMUNICATIONS. 17(1).
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Innate type 2 lymphocytes trigger an inflammatory switch in alveolar macrophages

Stijn Verwaerde (UGent) , Jean-François Hastir (UGent) , Sjoerd Schetters (UGent) , Ursula Smole (UGent) , Leen Seys (UGent) , Antonio Pires da Silva Baptista (UGent) , Kieran English (UGent) , Martijn Schuijs (UGent) , Helena Catharine Aegerter (UGent) , Karel Van Damme (UGent) , et al.

(2026) IMMUNITY. 59(1). p.60-78
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Dissecting the impact of transcription factor dose on cell reprogramming heterogeneity using scTF-seq

Wangjie Liu, Wouter Saelens (UGent) , Pernille Rainer, Marjan Biocanin, Vincent Gardeux, Antoni Jakub Gralak, Guido van Mierlo, Angelika Gebhart, Julie Russeil, Tingdang Liu, et al.

(2025) NATURE GENETICS. 57(10). p.2522-2535
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ChromatinHD connects single-cell DNA accessibility and conformation to gene expression through scale-adaptive machine learning

Wouter Saelens (UGent) , Olga Pushkarev and Bart Deplancke

(2025) NATURE COMMUNICATIONS. 16(1).
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- A2
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funkyheatmap : visualising data frames with mixed data types

Robrecht Cannoodt (UGent) , Louise Deconinck (UGent) , Artuur Couckuyt, Nikolay S. Markov*, Luke Zappia, Malte D. Luecken, Marta Interlandi, Yvan Saeys (UGent) and Wouter Saelens (UGent)

(2025) JOURNAL OF OPEN SOURCE SOFTWARE. 10(108).
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Spatially restricted and ontogenically distinct hepatic macrophages are required for tissue repair

Federico Francesco De Ponti (UGent) , Anna Bujko (UGent) , Zhuangzhuang Liu (UGent) , Paul Collins (UGent) , Sara Schuermans, Christian Maueröder (UGent) , Seraja Amstelveen (UGent) , Tinne THONE (UGent) , Liesbet Martens (UGent) , John McKendrick (UGent) , et al.

(2025) IMMUNITY. 58(2). p.362-380
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A human omentum-specific mesothelial-like stromal population inhibits adipogenesis IGFBP2 secretion

Radiana Ferrero, Pernille Yde Rainer, Marie Rumpler, Julie Russeil, Magda Zachara, Joern Pezoldt, Guido van Mierlo, Vincent Gardeux, Wouter Saelens (UGent) , Daniel Alpern, et al.

(2024) CELL METABOLISM. 36(7). p.1566-1585
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Non-coding variants impact cis-regulatory coordination in a cell type-specific manner

Olga Pushkarev, Guido van Mierlo, Judith Franziska Kribelbauer, Wouter Saelens (UGent) , Vincent Gardeux and Bart Deplancke

(2024) GENOME BIOLOGY. 25(1).
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- Miscellaneous
- open access
SPArrOW : a flexible, interactive and scalable pipeline for spatial transcriptomics analysis

Lotte Pollaris (UGent) , Bavo Vanneste (UGent) , Benjamin Rombaut (UGent) , Arne Defauw (UGent) , Frank Vernaillen (UGent) , Julien Mortier (UGent) , Wout Vanhenden, Liesbet Martens (UGent) , Tinne THONE (UGent) , Jean-François Hastir (UGent) , et al.

(2024) bioRxiv.
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- Miscellaneous
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The unfolded protein sensor IRE1a is essential for homeostatic dendritic cell maturation

Sophie Janssens (UGent) , Victor Bosteels, Sandra Maréchal (UGent) , Eva Cloots (UGent) , Laurien Van Heddegem, Simon Tavernier (UGent) , Sofie Rennen (UGent) , Clint De Nolf (UGent) , Seraja Amstelveen (UGent) , Jonathan Maelfait (UGent) , et al.

(2024) Research Square.

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