Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Wouter Saelens

ORCID iD: 0000-0002-7114-6248

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- A1
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CD8 memory precursor cell generation is a continuous process

Helena Todorov, Margaux Prieux, Daphne Laubreton, Matteo Bouvier, Shaoying Wang, Simon de Bernard, Christophe Arpin, Robrecht Cannoodt (UGent) , Wouter Saelens, Arnaud Bonnaffoux, et al.

(2022) ISCIENCE. 25(9).
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Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition

Johannes Bues, Marjan Biocanin, Joern Pezoldt, Riccardo Dainese, Antonius Chrisnandy, Saba Rezakhani, Wouter Saelens, Vincent Gardeux, Revant Gupta, Rita Sarkis, et al.

(2022) NATURE METHODS. 19(3). p.323-330
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Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

Martin Guilliams (UGent) , Johnny Bonnardel (UGent) , Birthe Haest (UGent) , Bart Vanderborght (UGent) , Camille Wagner (UGent) , Anneleen Remmerie (UGent) , Anna Bujko (UGent) , Liesbet Martens (UGent) , Tinne Thoné (UGent) , Robin Browaeys (UGent) , et al.

(2022) CELL. 185(2). p.379-396
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Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells

Robrecht Cannoodt (UGent) , Wouter Saelens, Louise Deconinck (UGent) and Yvan Saeys (UGent)

(2021) NATURE COMMUNICATIONS. 12(1).
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- Journal Article
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TinGa : fast and flexible trajectory inference with Growing Neural Gas

Helena Todorov, Robrecht Cannoodt (UGent) , Wouter Saelens and Yvan Saeys (UGent)

(2020) BIOINFORMATICS. 36(Suppl 1). p.66-74
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A scalable SCENIC workflow for single-cell gene regulatory network analysis

Bram van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck (UGent) , Wouter Saelens, Robrecht Cannoodt (UGent) , Quentin Rouchon (UGent) , et al.

(2020) NATURE PROTOCOLS. 15(7). p.2247-2276
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NicheNet : modeling intercellular communication by linking ligands to target genes

Robin Browaeys (UGent) , Wouter Saelens and Yvan Saeys (UGent)

(2020) NATURE METHODS. 17(2). p.159-162
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- Journal Article
- A1
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Trajectory-based differential expression analysis for single-cell sequencing data

Koen Van den Berge (UGent) , Hector Roux de Bézieux, Kelly Street, Wouter Saelens, Robrecht Cannoodt (UGent) , Yvan Saeys (UGent) , Sandrine Dudoit and Lieven Clement (UGent)

(2020) NATURE COMMUNICATIONS. 11(1).
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- Book Chapter
Network inference from single-cell transcriptomic data

Helena Todorov, Robrecht Cannoodt (UGent) , Wouter Saelens and Yvan Saeys (UGent)

(2019) Gene regulatory networks : methods and protocols. In Methods in Molecular Biology 1883. p.235-249
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- PhD Thesis
- open access
Developing and benchmarking methods for analysing transcriptomics data

Wouter Saelens

(2019)

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