Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Tim Van Den Bossche

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

Work address: Technologiepark-Zwijnaarde 75, FSVMII
9052 Zwijnaarde
Email: Tim.VanDenBossche@UGent.be
ORCID iD: 0000-0002-5916-2587

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Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Kay Schallert, Harald Barsnes, Peter Dawyndt (UGent) , Dirk Benndorf, Bernhard Y. Renard, Bart Mesuere (UGent) , Lennart Martens (UGent) and Thilo Muth

(2020) JOURNAL OF PROTEOME RESEARCH.
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Unipept CLI 2.0 : adding support for visualisations and functional annotations

Pieter Verschaffelt (UGent) , Philippe Van Thienen, Tim Van Den Bossche (UGent) , Felix Van der Jeugt (UGent) , Caroline De Tender (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2020) BIOINFORMATICS.
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- Miscellaneous
- open access
An unforgettable PhD conference: VIBes2020

Tim Van Den Bossche (UGent) , Maria Giulia Doglio (UGent) and Anna Chrzanowska

(2020)
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The age of data-driven proteomics : how machine learning enables novel workflows

Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2020) PROTEOMICS.
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- Conference Paper
- C3
- open access
The HUPO-PSI standardized spectral library format

Ralf Gabriels (UGent) , Nuno Bandeira, Wout Bittremieux, Jeremy J Carver, Matthew Chambers, Shin Kawano, Henry Lam, Tytus Mak, Yasset Perez-Riverol, Benjamin J Pullman, et al.

(2020) EuBIC 2020 developers' meeting.
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- open access
gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms

Maria Muñoz-Benavent, Felix Hartkopf, Tim Van Den Bossche (UGent) , Vitor C. Piro, Carlos García-Ferris, Amparo Latorre, Bernhard Y Renard and Thilo Muth

(2019)
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- Conference Paper
- C3
Rescoring peptide-to-spectrum-matches based on predicted fragment ion intensities leads to an increased identification rate in metaproteomics

Tim Van Den Bossche (UGent) , Ana Sílvia Ferreira Diamantino Coelho e Silva (UGent) , Bernhard Y Renard, Thilo Muth and Lennart Martens (UGent)

(2019) Human Proteome Organization, 18th World congress, Abstracts.
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- Conference Paper
- C3
Prediction-based reduction of the search space in metaproteomics

Tim Van Den Bossche (UGent) and Lennart Martens (UGent)

(2019) EuBIC Winter School, Abstracts.
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Proteomics Standards Initiative extended FASTA format

Pierre-Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J Chalkley, Gerben Menschaert (UGent) , Emanuele Alpi, Karl Clauser, Jimmy K Eng, Lydie Lane, et al.

(2019) JOURNAL OF PROTEOME RESEARCH. 18(6). p.2686-2692
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Challenges and promise at the interface of metaproteomics and genomics : an overview of recent progress in metaproteogenomic data analysis

Henning Schiebenhoefer, Tim Van Den Bossche (UGent) , Stephan Fuchs, Bernhard Y Renard, Thilo Muth and Lennart Martens (UGent)

(2019) EXPERT REVIEW OF PROTEOMICS. 16(5). p.375-390

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