Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Tim Van Den Bossche

Work address: Sint-Pietersnieuwstraat 25, Rect.1
9000 Gent
Email: Tim.VanDenBossche@UGent.be
ORCID iD: 0000-0002-5916-2587

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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180
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- PhD Thesis
Benchmark and improving methods in metaproteomics informatics

Tim Van Den Bossche (UGent)

(2022)
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The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS) : an open community for bioinformatics training and research

Wout Bittremieux, David Bouyssié, Viktoria Dorfer, Marie Locard‐Paulet, Yasset Perez‐Riverol, Veit Schwämmle, Julian Uszkoreit and Tim Van Den Bossche (UGent)

(2022) RAPID COMMUNICATIONS IN MASS SPECTROMETRY.
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- Miscellaneous
- open access
Sensitive and specific spectral library searching with COSS and Percolator

Genet Abay Shiferaw (UGent) , Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Tim Van Den Bossche (UGent) , Elien Vandermarliere (UGent) , Lennart Martens (UGent) and Pieter-Jan Volders (UGent)

(2021)
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- Journal Article
- A1
- open access
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

Tim Van Den Bossche (UGent) , Magnus Ø. Arntzen, Dörte Becher, Dirk Benndorf, Vincent G. H. Eijsink, Céline Henry, Pratik D. Jagtap, Nico Jehmlich, Catherine Juste, Benoit J. Kunath, et al.

(2021) MICROBIOME. 9(1).
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- Journal Article
- A1
- open access
Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- Miscellaneous
- open access
Proteomics standards initiatives ProForma 2.0 unifying the encoding of proteoforms and peptidoforms

Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Arshika Yalavarthi, Yasset Perez-Riverol, et al.

(2021) ARXIV.
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- Miscellaneous
- open access
Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files

Tim Van Den Bossche (UGent) , Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf and Lennart Martens (UGent)

(2021) BIORXIV.
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- Miscellaneous
- open access
Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) BIORXIV.
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- Journal Article
- A1
- open access
A proteomics sample metadata representation for multiomics integration and big data analysis

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, et al.

(2021) NATURE COMMUNICATIONS. 12(1).

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