Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Tim Van Den Bossche

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0002-5916-2587

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- Journal Article
- open access
Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes

Robert Heyer, Maximilian Wolf, [missing] Benndorf, Sergio Uzzau, Jana Seifert, Lucia Grenga, Martin Pabst, Heike Schmitt, Bart Mesuere (UGent) , Tim Van Den Bossche (UGent) , et al.

(2025) Microbiome. 13(1).
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- Journal Article
- A1
- open access
The microbiologist's guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J. Griffin, et al.

(2025) IMETA. 4(3).
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Creating a supportive academic culture by preventing and responding to transgressive behavior

Tim Van Den Bossche (UGent) , Dries Bostyn (UGent) , Femke De Backere (UGent) and Sean Bex (UGent)

(2025) NATURE MENTAL HEALTH. 3(5). p.481-482
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- Journal Article
- A1
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TIMS2Rescore : a data dependent acquisition-parallel accumulation and serial fragmentation-optimized data-driven rescoring pipeline based on MS2Rescore

Arthur Declercq (UGent) , Robbe Devreese (UGent) , Jonas Scheid, Caroline Jachmann (UGent) , Tim Van Den Bossche (UGent) , Annica Preikschat, David Gomez-Zepeda, Jeewan Babu Rijal, Aurelie Hirschler, Jonathan R. Krieger, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(3). p.1067-1076
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- Miscellaneous
- open access
The microbiologist’s guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley-Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J Griffin, et al.

(2025) ChemRxiv.
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- Miscellaneous
- open access
Emergence and global spread of Mpox Clade Ib : challenges and the role of wastewater and environmental surveillance

Ananda Tiwari, Thierry Kalonji, Taru Miller, Tim Van Den Bossche (UGent) , Adriana Krolicka, Hypolite Muhindo-Mavoko, Patrick Mitashi, Marc Christian Tahita, Rolf Lood, Tarja Pitkänen, et al.

(2025) JOURNAL OF INFECTIOUS DISEASES.
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- Journal Article
- A1
- open access
PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2025) MOLECULAR & CELLULAR PROTEOMICS. 24(3).
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Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande Moortele (UGent) , Bram Devlaminck, Simon Van de Vyver (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.949-954
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- Journal Article
- A1
- open access
The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS) : an open community for bioinformatics training and research

Wout Bittremieux, David Bouyssié, Viktoria Dorfer, Marie Locard‐Paulet, Yasset Perez‐Riverol, Veit Schwämmle, Julian Uszkoreit and Tim Van Den Bossche (UGent)

(2025) RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 39(S1).
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- Miscellaneous
The Peptonizer2000 : bringing confidence to metaproteomics

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Simon Van de Vyver (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Thilo Muth

(2024) bioRxiv.

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