Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Tim Van Den Bossche

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0002-5916-2587

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- A1
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The Escherichia coli PeptideAtlas build : characterizing the observed Escherichia coli pan-proteome and its post-translational modifications

Caroline Jachmann (UGent) , Zhi Sun, Kevin Velghe (UGent) , Florence Arsène-Ploetze, Aurélie Hirschler, Jasper Zuallaert (UGent) , Christine Carapito, Robbin Bouwmeester (UGent) , Kay Nieselt, Eric W. Deutsch, et al.

(2026) JOURNAL OF PROTEOME RESEARCH. 25(2). p.1027-1041
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BioSamples database : the global hub for sample metadata and multi-omics integration

Dipayan Gupta, Isuru Liyanage, Yasset Perez-Riverol, Enrique Sapena Ventura, Wei Kheng Teh, Tim Van Den Bossche (UGent) , Senthilnathan Vijayaraja, Amnon Khen, Ugis Sarkans, Tony Burdett, et al.

(2026) NUCLEIC ACIDS RESEARCH. 54(D1). p.D1761-D1767
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Unlocking the next decade of proteomics with standardized, structured metadata

Tim Van Den Bossche (UGent) , Ananth Prakash, Tine Claeys (UGent) , Juan Antonio Vizcaíno and Lennart Martens (UGent)

(2026) JOURNAL OF PROTEOME RESEARCH. 25(2). p.556-561
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Establishing the ELIXIR microbiome community

Robert D. Finn, Bachir Balech, Josephine Burgin, Physilia Chua, Erwan Corre, Cymon J. Cox, Claudio Donati, Vitor Martins dos Santos, Bruno Fosso, John Hancock, et al.

(2025) F1000RESEARCH. 13. p.1-47
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MzPeak : designing a scalable, interoperable, and future-ready mass spectrometry data format

Tim Van Den Bossche (UGent) , Theodore Alexandrov, Aivett Bilbao, Wout Bittremieux, Federico Ivan Brigante, Matthew Chase Chambers, Joshua Charkow, Eric Deutsch, Andrew W. Dowsey, Yasin El Abiead, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(11). p.5329-5335
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Critical Assessment of MetaProteome Investigation 2 (CAMPI-2) : multi-laboratory assessment of sample processing methods to stabilize fecal microbiome for functional analysis

Alessandro Tanca, Kay Schallert, Lucia Grenga, Samantha L. Peters, Marcello Abbondio, Laura De Diego, Maria Antonietta Deledda, Sven-Bastiaan Haange, Guylaine Miotello, Johan S. Sáenz, et al.

(2025) MICROBIOME. 13(1).
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Illuminating the invisible : green fluorescent protein as a beacon for antibiotic-induced phage activity in Escherichia coli

Maria João Silva, Tim Van Den Bossche (UGent) , Mattias Collin and Rolf Lood

(2025) ANTIBIOTICS-BASEL. 14(7).
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- Miscellaneous
- open access
Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes

Robert Heyer, Maximilian Wolf, Dirk Benndorf, Sergio Uzzau, Jana Seifert, Lucia Grenga, Martin Pabst, Heike Schmitt, Bart Mesuere (UGent) , Tim Van Den Bossche (UGent) , et al.

(2025) MICROBIOME. 13(1).
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- A1
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The microbiologist's guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J. Griffin, et al.

(2025) IMETA. 4(3).
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- Journal Article
- A2
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Creating a supportive academic culture by preventing and responding to transgressive behavior

Tim Van Den Bossche (UGent) , Dries Bostyn (UGent) , Femke De Backere (UGent) and Sean Bex (UGent)

(2025) NATURE MENTAL HEALTH. 3(5). p.481-482

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