Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. Sven Degroeve

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0001-8349-3370

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- Journal Article
- A1
- open access
Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links

Arslan Siraj, Robbin Bouwmeester (UGent) , Arthur Declercq (UGent) , Luisa Welp, Aleksandar Chernev, Alexander Wulf, Henning Urlaub, Lennart Martens (UGent) , Sven Degroeve (UGent) , Oliver Kohlbacher, et al.

(2024) PROTEOMICS. 24(8).
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- Book Chapter
Bioinformatics pipeline for processing single-cell data

Arthur Declercq (UGent) , Nina Demeulemeester (UGent) , Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2024) Mass spectrometry based single cell proteomics. In Methods in molecular biology (MIMB) 2817. p.221-239
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- Journal Article
- A1
- open access
MS²Rescore 3.0 is a modular, flexible, and user-friendly platform to boost peptide identifications, as showcased with MS Amanda 3.0

Louise M. Buur, Arthur Declercq (UGent) , Marina Strobl, Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Viktoria Dorfer and Ralf Gabriels (UGent)

(2024) JOURNAL OF PROTEOME RESEARCH. 23(8). p.3200-3207
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- Journal Article
- A1
- open access
Updated MS²PIP web server supports cutting-edge proteomics applications

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Cristina Chiva, Eduard Sabido, Aurelie Hirschler, Christine Carapito, Lennart Martens (UGent) , Sven Degroeve (UGent) and Ralf Gabriels (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(W1). p.W338-W342
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- Journal Article
- A1
- open access
Toward an integrated machine learning model of a proteomics experiment

Benjamin A. Neely, Viktoria Dorfer, Lennart Martens (UGent) , Isabell Bludau, Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) , Eric W. Deutsch, Siegfried Gessulat, Lukas Kaell, Pawel Palczynski, et al.

(2023) JOURNAL OF PROTEOME RESEARCH. 22(3). p.681-696
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- Miscellaneous
- open access
PhosphoLingo : protein language models for phosphorylation site prediction

Jasper Zuallaert (UGent) , Pathmanaban Ramasamy (UGent) , Robbin Bouwmeester (UGent) , Nico Callewaert (UGent) and Sven Degroeve (UGent)

(2023) BioRXiv.
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- Journal Article
- A1
- open access
psm_utils : a high-level python API for parsing and handling peptide-spectrum matches and proteomics search results

Ralf Gabriels (UGent) , Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 22(2). p.557-560
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- Miscellaneous
- open access
Psm_utils : a high level Python API for parsing and handling peptide-spectrum-matches and proteomics search results

Ralf Gabriels (UGent) , Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2022) ChemRxiv.
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- Journal Article
- A1
- open access
MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Aurélie Hirschler, Christine Carapito, Sven Degroeve (UGent) , Lennart Martens (UGent) and Ralf Gabriels (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).
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- Conference Paper
- C3
Orthogonal proteomics methods to unravel the HOTAIR interactome

Louis Delhaye (UGent) , Edith De Bruycker (UGent) , Pieter-Jan Volders (UGent) , Daria Fijalkowska (UGent) , Delphine De Sutter (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Pieter Mestdagh (UGent) and Sven Eyckerman (UGent)

(2022) Next-Generation Protein Analysis and Detection (4th edition), Abstracts.

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