Bavo Vanneste

Journal Article
A1
open access

Inhibiting peripheral serotonin activates liver AMPK and reduces monocyte-derived macrophages and fibrosis

Battsetseg Batchuluun, Tinne THONE (UGent) , Andre Djalalvandi, Russta Fayyazi, Parneet Deo, Julian M. Yabut, Sara Maggiore (UGent) , Bavo Vanneste (UGent) , Jaya Gautam, Logan K. Townsend, et al.

(2025) CELL REPORTS. 44(12).

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Journal Article
A1
open access

Spatially restricted and ontogenically distinct hepatic macrophages are required for tissue repair

Federico Francesco De Ponti (UGent) , Anna Bujko (UGent) , Zhuangzhuang Liu (UGent) , Paul Collins (UGent) , Sara Schuermans, Christian Maueröder (UGent) , Seraja Amstelveen (UGent) , Tinne THONE (UGent) , Liesbet Martens (UGent) , John McKendrick (UGent) , et al.

(2025) IMMUNITY. 58(2). p.362-380

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Miscellaneous
open access

SPArrOW : a flexible, interactive and scalable pipeline for spatial transcriptomics analysis

Lotte Pollaris (UGent) , Bavo Vanneste (UGent) , Benjamin Rombaut (UGent) , Arne Defauw (UGent) , Frank Vernaillen (UGent) , Julien Mortier (UGent) , Wout Vanhenden, Liesbet Martens (UGent) , Tinne THONE (UGent) , Jean-François Hastir (UGent) , et al.

(2024) bioRxiv.

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Journal Article
A1
open access

NBAtlas : a harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors

Noah Bonine (UGent) , Vittorio Zanzani (UGent) , Annelies Van Hemelryk (UGent) , Bavo Vanneste (UGent) , Christian Zwicker (UGent) , Tinne THONE (UGent) , Sofie Roelandt (UGent) , Sarah-Lee Bekaert (UGent) , Jan Koster, Isabelle Janoueix-Lerosey, et al.

(2024) CELL REPORTS. 43(10).

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Journal Article
A1
open access

Host-pathogen interactions in the Plasmodium-infected mouse liver at spatial and single-cell resolution

Franziska Hildebrandt, Miren Urrutia Iturritza, Christian Zwicker (UGent) , Bavo Vanneste (UGent) , Noemi Van Hul, Elisa Semle, Jaclyn Quin, Tales Pascini, Sami Saarenpaa, Mengxiao He, et al.

(2024) NATURE COMMUNICATIONS. 15(1).

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Conference Paper
C3
open access

A harmonized single-cell transcriptomic atlas of human neuroblastoma

Noah Bonine (UGent) , Vittorio Zanzani (UGent) , Liselot Mus (UGent) , Bavo Vanneste (UGent) , Christian Zwicker (UGent) , Tinne THONE (UGent) , Sofie Roelandt (UGent) , Cécile Thirant, Amira Kramdi, Isabelle Janoueix-Lerosey, et al.

(2023) Advances in Neuroblastoma Research (ANR) Meeting 2023, Abstracts.

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Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah Bonine (UGent) , Tinne THONE (UGent) , Bavo Vanneste (UGent) , Liselot Mus (UGent) , Celine Everaert (UGent) , Bram De Wilde (UGent) , Franki Speleman (UGent) , Charlotte Scott (UGent) and Katleen De Preter (UGent)

(2022) EMBO Workshop 'Cancer cell signaling : Linking molecular knowledge to cancer therapy', Abstracts.

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Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah Bonine (UGent) , Tinne THONE (UGent) , Bavo Vanneste (UGent) , Liselot Mus (UGent) , Celine Everaert (UGent) , Bram De Wilde (UGent) , Franki Speleman (UGent) , Charlotte Scott (UGent) and Katleen De Preter (UGent)

(2022) Single Cell Network Ghent (SING) kick-off event, Abstracts.

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Journal Article
A1
open access

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

Martin Guilliams (UGent) , Johnny Bonnardel (UGent) , Birthe Haest (UGent) , Bart Vanderborght (UGent) , Camille Wagner (UGent) , Anneleen Remmerie, Anna Bujko (UGent) , Liesbet Martens (UGent) , Tinne THONE (UGent) , Robin Browaeys (UGent) , et al.

(2022) CELL. 185(2). p.379-396

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Journal Article
A1
open access

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

Anneleen Remmerie, Liesbet Martens (UGent) , Tinne THONE (UGent) , Angela Castoldi, Ruth Seurinck (UGent) , Benjamin Pavie (UGent) , Joris Roels (UGent) , Bavo Vanneste (UGent) , Sofie De Prijck (UGent) , Mathias Vanhockerhout (UGent) , et al.

(2020) IMMUNITY. 53(3). p.641-657.e1–e14

Academic Bibliography

Bavo Vanneste

Inhibiting peripheral serotonin activates liver AMPK and reduces monocyte-derived macrophages and fibrosis

Spatially restricted and ontogenically distinct hepatic macrophages are required for tissue repair

SPArrOW : a flexible, interactive and scalable pipeline for spatial transcriptomics analysis

NBAtlas : a harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors

Host-pathogen interactions in the Plasmodium-infected mouse liver at spatial and single-cell resolution

A harmonized single-cell transcriptomic atlas of human neuroblastoma

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

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