Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Patrick Willems

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0003-4667-2294

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- Journal Article
- A1
- open access
Increased plasma fibronectin mirrors intimal phenotypic switching of vascular smooth muscle cells in moyamoya arteriopathy

Caroline Asselman (UGent) , Jozefien Meersschaut (UGent) , Patrick Willems (UGent) , Julien Mortier (UGent) , Frank Vernaillen (UGent) , Elisabeth Dhondt (UGent) , Anne Sieben, Sasha Libbrecht, Maria Fernandez Fernandez (UGent) , Kris Gevaert (UGent) , et al.

(2026) SCIENTIFIC REPORTS. 16(1).
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Data-independent immunopeptidomics discovery of low-abundant bacterial epitopes

Patrick Willems (UGent) , An Staes (UGent) , Laia Miret Casals (UGent) , Vadim Demichev, Simon Devos (UGent) and Francis Impens (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(12). p.6295-6304
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- Miscellaneous
Target acquired : lock-on bacterial immunopeptides

Patrick Willems (UGent) , Lyudmila Kovalchuke (UGent) and Francis Impens (UGent)

(2025) JOURNAL OF EXPERIMENTAL MEDICINE. 222(10).
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- Journal Article
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Challenges and opportunities in mRNA vaccine development against bacteria

Ilke Aernout (UGent) , Rein Verbeke (UGent) , Fabien Henri Thery (UGent) , Patrick Willems (UGent) , Uri Elia, Stefaan De Smedt (UGent) , Rino Rappuoli, Dan Peer, Francis Impens (UGent) and Ine Lentacker (UGent)

(2025) NATURE MICROBIOLOGY. 10(8). p.1816-1828
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Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

Patrick Willems (UGent) , Fabien Henri Thery (UGent) , Laura Van Moortel (UGent) , Margaux De Meyer (UGent) , An Staes (UGent) , Adillah Gul (UGent) , Lyudmila Kovalchuke (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Robbin Bouwmeester (UGent) , et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.2141-2151
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Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems (UGent) , Lara De Deyn, Lena Duchateau, Carolin Seyfferth (UGent) , Thomas Eekhout (UGent) , et al.

(2024) BIOINFORMATICS. 40(9).
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Immunopeptidomics mapping of Listeria monocytogenes T cell epitopes in mice

Adillah Gul (UGent) , Lecia L. Pewe, Patrick Willems (UGent) , Rupert Mayer (UGent) , Fabien Henri Thery (UGent) , Caroline Asselman (UGent) , Ilke Aernout (UGent) , Rein Verbeke (UGent) , Denzel Eggermont (UGent) , Laura Van Moortel (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(9).
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TermineR : extracting information on endogenous proteolytic processing from shotgun proteomics data

Miguel Cosenza‐Contreras, Adrianna Seredynska, Daniel Vogele, Niko Pinter, Eva Brombacher, Ruth Fiestas Cueto, Thien‐Ly Julia Dinh, Patrick Bernhard, Manuel Rogg, Junwei Liu, et al.

(2024) PROTEOMICS. 24(19).
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- Journal Article
- A1
- open access
The Plant PTM Viewer 2.0 : in-depth exploration of plant protein modification landscapes

Patrick Willems (UGent) , Lieven Sterck (UGent) , Avilien Dard (UGent) , Jingjing Huang (UGent) , Ive De Smet (UGent) , Kris Gevaert (UGent) and Frank Van Breusegem (UGent)

(2024) JOURNAL OF EXPERIMENTAL BOTANY. 75(15). p.4611-4624
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CysQuant : simultaneous quantification of cysteine oxidation and protein abundance using data dependent or independent acquisition mass spectrometry

Jingjing Huang (UGent) , An Staes (UGent) , Francis Impens (UGent) , Vadim Demichev, Frank Van Breusegem (UGent) , Kris Gevaert (UGent) and Patrick Willems (UGent)

(2023) REDOX BIOLOGY. 67.

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