Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Thomas Eekhout

Faculty of Sciences > Department of Plant Biotechnology and Bioinformatics

ORCID iD: 0000-0002-2878-1553

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- Journal Article
- A1
- open access
Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems (UGent) , Lara De Deyn, Lena Duchateau, Carolin Grones, Thomas Eekhout (UGent) , et al.

(2024) BIOINFORMATICS. 40(9).
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Neoantigen-targeted dendritic cell vaccination in lung cancer patients induces long-lived T cells exhibiting the full differentiation spectrum

Joline Ingels (UGent) , Laurenz De Cock (UGent) , Dieter Stevens (UGent) , Rupert Mayer (UGent) , Fabien Henri Thery (UGent) , Guillem Sanchez Sanchez, David Vermijlen, Karin Weening (UGent) , Saskia De Smet (UGent) , Nele Lootens (UGent) , et al.

(2024) CELL REPORTS MEDICINE. 5(5).
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The stem cell niche transcription factor ETHYLENE RESPONSE FACTOR 115 participates in aluminum‐induced terminal differentiation in Arabidopsis roots

Paul B. Larsen, Shiyang He, Taylor J. Meyer, Miriam Szurman‐Zubrzycka, Carolin Alfs, Jolanta Kwasniewska, Alexandra Pervis, Monika Gajecka, Aishwarya Veerabahu, Taylor R. Beaulieu, et al.

(2024) PLANT CELL AND ENVIRONMENT.
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- Miscellaneous
- open access
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

Carolin Grones, Thomas Eekhout (UGent) , Dongbo Shi, Manuel Neumann, Lea S. Berg, Yuji Ke (UGent) , Rachel Shahan, Kevin L. Cox Jr, Fabio Gomez-Cano, Hilde Nelissen (UGent) , et al.

(2024) PLANT CELL. 36(4). p.812-828
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- Book Chapter
Single cell RNA-sequencing in Arabidopsis root tissues

Yuji Ke (UGent) , Max Minne (UGent) , Thomas Eekhout (UGent) and Bert De Rybel (UGent)

(2023) Plant gene regulatory networks : methods and protocols. In Methods in Molecular Biology 2698. p.41-56
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Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division

Kim Eunji (UGent) , Cheng Zhang, Boyu Guo (UGent) , Thomas Eekhout (UGent) , Anaxi Houbaert, Jos Wendrich (UGent) , Niels Vandamme (UGent) , Manish Tiwari (UGent) , Claire Simon--Vezo (UGent) , Isabelle Vanhoutte (UGent) , et al.

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(36).
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Distinctive and complementary roles of E2F transcription factors during plant replication stress responses

Maherun Nisa, Thomas Eekhout (UGent) , Clara Bergis, José Antonio Pedroza-Garcia (UGent) , Xiaoning He, Christelle Mazubert, Ilse Vercauteren (UGent) , Toon Cools (UGent) , Rim Brik-Chaouche, Jeannine Drouin-Wahbi, et al.

(2023) MOLECULAR PLANT. 16(8). p.1269-1282
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- A1
- open access
PAT1-type GRAS-domain proteins control regeneration by activating DOF3.4 to drive cell proliferation in Arabidopsis roots

Anchal Bisht, Thomas Eekhout (UGent) , Balkan Canher (UGent) , Ran Lu, Ilse Vercauteren (UGent) , Geert De Jaeger (UGent) , Jefri Heyman (UGent) and Lieven De Veylder (UGent)

(2023) PLANT CELL. 35(5). p.1513-1531
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Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division

Alex Willems, Yuanke Liang, Jefri Heyman (UGent) , Thomas Depuydt, Thomas Eekhout (UGent) , Balkan Canher (UGent) , Hilde Van Den Daele (UGent) , Ilse Vercauteren (UGent) , Klaas Vandepoele (UGent) and Lieven De Veylder (UGent)

(2023) PLANT PHYSIOLOGY. 191(3). p.1574-1595
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- Miscellaneous
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Cell type-specific attenuation of brassinosteroid signalling drives stomatal asymmetric cell division

Kim Eunji (UGent) , Cheng Zhang, Boyu Guo (UGent) , Thomas Eekhout (UGent) , Anaxi Houbaert, Jos Wendrich (UGent) , Niels Vandamme (UGent) , Manish Tiwari (UGent) , Claire Simon--Vezo (UGent) , Isabelle Vanhoutte (UGent) , et al.

(2022)

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