Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Thomas Eekhout

Faculty of Sciences > Department of Plant Biotechnology and Bioinformatics

ORCID iD: 0000-0002-2878-1553

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KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death

Nicolas Doll (UGent) , Yannick Fierlej, Thomas Eekhout (UGent) , Lisa Elias, Clément Bellot, Geng Sun (UGent) , Carolin Seyfferth (UGent) , Stijn Aesaert (UGent) , Griet Coussens (UGent) , Riet De Rycke (UGent) , et al.

(2025) PLANT CELL. 37(7).
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The dynamic and diverse nature of parenchyma cells in the Arabidopsis root during secondary growth

Munan Lyu, Hiroyuki Iida, Thomas Eekhout (UGent) , Meeri Mäkelä, Sampo Muranen, Lingling Ye, Anne Vatén, Brecht Wybouw, Xin Wang, Bert De Rybel (UGent) , et al.

(2025) NATURE PLANTS. 11(4). p.878-890
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Dual and spatially resolved drought responses in the Arabidopsis leaf mesophyll revealed by single‐cell transcriptomics

Rubén Tenorio Berrio (UGent) , Eline Verhelst (UGent) , Thomas Eekhout (UGent) , Carolin Seyfferth (UGent) , Lieven De Veylder (UGent) , Bert De Rybel (UGent) and Marieke Dubois (UGent)

(2025) NEW PHYTOLOGIST. 246(3). p.840-858
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A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators

Yuji Ke (UGent) , Vincent Pujol (UGent) , Jasper Staut (UGent) , Lotte Pollaris (UGent) , Ruth Seurinck (UGent) , Thomas Eekhout (UGent) , Carolin Seyfferth (UGent) , Maite Saura Sanchez (UGent) , Michiel Van Bel (UGent) , Marnik Vuylsteke (UGent) , et al.

(2025) CELL REPORTS. 44(2).
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Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems (UGent) , Lara De Deyn, Lena Duchateau, Carolin Seyfferth (UGent) , Thomas Eekhout (UGent) , et al.

(2024) BIOINFORMATICS. 40(9).
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Neoantigen-targeted dendritic cell vaccination in lung cancer patients induces long-lived T cells exhibiting the full differentiation spectrum

Joline Ingels (UGent) , Laurenz De Cock, Dieter Stevens (UGent) , Rupert Mayer (UGent) , Fabien Henri Thery (UGent) , Guillem Sanchez Sanchez, David Vermijlen, Karin Weening (UGent) , Saskia De Smet (UGent) , Nele Lootens (UGent) , et al.

(2024) CELL REPORTS MEDICINE. 5(5).
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The stem cell niche transcription factor ETHYLENE RESPONSE FACTOR 115 participates in aluminum‐induced terminal differentiation in Arabidopsis roots

Paul B. Larsen, Shiyang He, Taylor J. Meyer, Miriam Szurman‐Zubrzycka, Carolin Alfs, Jolanta Kwasniewska, Alexandra Pervis, Monika Gajecka, Aishwarya Veerabahu, Taylor R. Beaulieu, et al.

(2024) PLANT CELL AND ENVIRONMENT. 47(11). p.4432-4448
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- Miscellaneous
- open access
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

Carolin Seyfferth (UGent) , Thomas Eekhout (UGent) , Dongbo Shi, Manuel Neumann, Lea S. Berg, Yuji Ke (UGent) , Rachel Shahan, Kevin L. Cox Jr, Fabio Gomez-Cano, Hilde Nelissen (UGent) , et al.

(2024) PLANT CELL. 36(4). p.812-828
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- Book Chapter
Single cell RNA-sequencing in Arabidopsis root tissues

Yuji Ke (UGent) , Max Minne (UGent) , Thomas Eekhout (UGent) and Bert De Rybel (UGent)

(2023) Plant gene regulatory networks : methods and protocols. In Methods in Molecular Biology 2698. p.41-56
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Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division

Kim Eunji (UGent) , Cheng Zhang, Boyu Guo (UGent) , Thomas Eekhout (UGent) , Anaxi Houbaert, Jos Wendrich (UGent) , Niels Vandamme (UGent) , Manish Tiwari (UGent) , Claire Simon--Vezo (UGent) , Isabelle Vanhoutte (UGent) , et al.

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(36).

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