Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Sofie Van Gassen

Faculty of Sciences > Department of Applied mathematics, computer science and statistics

ORCID iD: 0000-0002-7119-5330

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Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools

Artuur Couckuyt (UGent) , Benjamin Rombaut (UGent) , Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2024) BIOINFORMATICS. 40(4).
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Myelodysplastic neoplasms dissected into indolent, leukaemic and unfavourable subtypes by computational clustering of haematopoietic stem and progenitor cells

Margot F. van Spronsen, Sofie Van Gassen (UGent) , Carolien Duetz, Theresia M. Westers, Yvan Saeys (UGent) and Arjan A. van de Loosdrecht

(2024) LEUKEMIA. 38. p.pages1365-1377
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A robust pipeline for high-content, high-throughput immunophenotyping reveals age- and genetics-dependent changes in blood leukocytes

Thomas Liechti, Sofie Van Gassen (UGent) , Margaret Beddall, Reid Ballard, Yaser Iftikhar, Renguang Du, Thiagarajan Venkataraman, David Novák (UGent) , Massimo Mangino, Stephen Perfetto, et al.

(2023) CELL REPORTS METHODS. 3(10).
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Adjuvant dendritic cell-based immunotherapy after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy in patients with malignant peritoneal mesothelioma : a phase II clinical trial

Michelle Dietz, Katrien Quintelier (UGent) , Job P. van Kooten, Nadine L. de Boer, Madelief Vink, Alexandra R. M. Brandt-Kerkhof, Cornelis Verhoef, Yvan Saeys (UGent) , Joachim G. J. V. Aerts, Marcella Willemsen, et al.

(2023) JOURNAL FOR IMMUNOTHERAPY OF CANCER. 11(8).
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Single-cell molecular profiling using ex vivo functional readouts fuels precision oncology in glioblastoma

Dena Panovska, Pouya Nazari, Basiel Cole, Pieter-Jan Creemers, Marleen Derweduwe, Lien Solie, Sofie Van Gassen (UGent) , Annelies Claeys, Tatjana Verbeke, Elizabeth F. Cohen, et al.

(2023) CELLULAR AND MOLECULAR LIFE SCIENCES. 80(6).
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Dysregulation of developmental and cell type-specific expression of glycoconjugates on hematopoietic cells : a new characteristic of myelodysplastic neoplasms (MDS)

Margot F. van Spronsen, Sophie Horrevorts, Claudia Cali, Theresia M. Westers, Sofie Van Gassen (UGent) , Yvan Saeys (UGent) , Sandra J. van Vliet, Yvette van Kooyk and Arjan A. van de Loosdrecht

(2023) LEUKEMIA. 37(3). p.702-707
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Gut inflammation in axial spondyloarthritis patients is characterized by a marked type 17 skewed mucosal innate‐like T cell signature

Céline Mortier (UGent) , Katrien Quintelier (UGent) , Ann-Sophie De Craemer (UGent) , Thomas Renson (UGent) , Liselotte Deroo (UGent) , Emilie Dumas (UGent) , Eveline Verheugen (UGent) , Julie Coudenys (UGent) , Tine Decruy (UGent) , Zuzanna Łukasik (UGent) , et al.

(2023) ARTHRITIS & RHEUMATOLOGY. 75(11). p.1969-1982
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LXR signaling controls homeostatic dendritic cell maturation

Victor Bosteels (UGent) , Sandra Maréchal (UGent) , Clint De Nolf (UGent) , Sofie Rennen (UGent) , Jonathan Maelfait (UGent) , Simon Tavernier (UGent) , Jessica Vetters (UGent) , Evelien Van De Velde (UGent) , Farzaneh Fayazpour (UGent) , Kim Deswarte (UGent) , et al.

(2023) SCIENCE IMMUNOLOGY. 8(83).
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Presence of innate lymphoid cells in allogeneic hematopoietic grafts correlates with reduced graft-versus-host disease

Anna Kroeze, Vera van Hoeven, Myrddin W. Verheij, Annelies W. Turksma, Naomi Weterings, Sofie Van Gassen (UGent) , Sacha S. Zeerleder, Bianca Blom, Carlijn Voermans and Mette D. Hazenberg

(2022) CYTOTHERAPY. 24(3). p.302-310
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Protocol for large scale whole blood immune monitoring by mass cytometry and Cyto Quality Pipeline

P Rybakowska, Sofie Van Gassen (UGent) , J Martorell Marugán, Katrien Quintelier (UGent) , Yvan Saeys (UGent) , ME Alarcón-Riquelme and C Marañón

(2022) STAR PROTOCOLS. 3(4).

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