Koen Van den Berge

Eli Bonneure (UGent) , Amber De Baets, Sam De Decker, Koen Van den Berge (UGent) , Lieven Clement (UGent) , Wim Vyverman (UGent) and Sven Mangelinckx (UGent)

(2021) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 22(3).

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Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta

Gust Bilcke (UGent) , Koen Van den Berge (UGent) , Sam De Decker, Eli Bonneure (UGent) , Nicole Poulsen, Petra Bulánková (UGent) , Cristina Osuna, Jack Dickenson, Koen Sabbe (UGent) , Georg Pohnert, et al.

(2021) ISME JOURNAL. 15. p.562-576

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Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

David H. Brann, Tatsuya Tsukahara, Caleb Weinreb, Marcela Lipovsek, Koen Van den Berge (UGent) , Boying Gong, Rebecca Chance, Iain C. Macaulay, Hsin-Jung Chou, Russell B. Fletcher, et al.

(2020) SCIENCE ADVANCES. 6(31).

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Distinctive growth and transcriptional changes of the diatom Seminavis robusta in response to quorum sensing related compounds

Frederike Stock genannt Schroer, Gust Bilcke (UGent) , Sam De Decker, Cristina Osuna, Koen Van den Berge (UGent) , Emmelien Vancaester, Lieven De Veylder (UGent) , Klaas Vandepoele (UGent) , Sven Mangelinckx (UGent) and Wim Vyverman (UGent)

(2020) FRONTIERS IN MICROBIOLOGY. 11.

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Trajectory-based differential expression analysis for single-cell sequencing data

Koen Van den Berge (UGent) , Hector Roux de Bézieux, Kelly Street, Wouter Saelens, Robrecht Cannoodt (UGent) , Yvan Saeys (UGent) , Sandrine Dudoit and Lieven Clement (UGent)

(2020) NATURE COMMUNICATIONS. 11(1).

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RNA sequencing data : hitchhiker's guide to expression analysis

Koen Van den Berge (UGent) , Katharina M Hembach, Charlotte Soneson, Simone Tiberi, Lieven Clement (UGent) , Michael I Love, Rob Patro and Mark D Robinson

(2019) ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE. 2. p.139-173

Academic Bibliography

Koen Van den Berge

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

A multimodal cell census and atlas of the mammalian primary motor cortex

satuRn : Scalable Analysis of differential Transcript Usage for bulk and single-cell RNA-sequencing applications

satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications

Altering the sex pheromone cyclo(L-Pro-L-Pro) of the diatom Seminavis robusta towards a chemical probe

Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

Distinctive growth and transcriptional changes of the diatom Seminavis robusta in response to quorum sensing related compounds

Trajectory-based differential expression analysis for single-cell sequencing data

RNA sequencing data : hitchhiker's guide to expression analysis

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