Ellen De Meester

DNA methylation regulates transcription factor-specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon

Jolien Diddens, Louis Coussement (UGent) , Carolina Frankl-Vilches, Gaurav Majumdar, Sandra Steyaert (UGent) , Sita M. Ter Haar, Jeroen Galle (UGent) , Ellen De Meester (UGent) , Sarah De Keulenaer (UGent) , Wim Van Criekinge (UGent) , et al.

(2021) FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 9.

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Journal Article
A1
open access

ADAR1 interaction with Z-RNA promotes editing of endogenous double-stranded RNA and prevents MDA5-dependent immune activation

Richard de Reuver (UGent) , Evelien Dierick (UGent) , Bartosz Wiernicki (UGent) , Katrien Staes (UGent) , Leen Seys (UGent) , Ellen De Meester (UGent) , Tuur Muyldermans (UGent) , Alexander Botzki (UGent) , Bart Lambrecht (UGent) , Filip Van Nieuwerburgh (UGent) , et al.

(2021) CELL REPORTS. 36(6).

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A1
open access

Distinct transcriptome signatures of Helicobacter suis and Helicobacter heilmannii strains upon adherence to human gastric epithelial cells

Helena Berlamont, Chloë De Witte (UGent) , Eva Bauwens, Hannah Min Jou (UGent) , Richard Ducatelle (UGent) , Ellen De Meester (UGent) , Yannick Gansemans (UGent) , Dieter Deforce (UGent) , Filip Van Nieuwerburgh (UGent) , Freddy Haesebrouck (UGent) , et al.

(2020) VETERINARY RESEARCH. 51(1).

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A1
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Photothermally triggered endosomal escape and its influence on transfection efficiency of gold-functionalized JetPEI/pDNA nanoparticles

Lotte Vermeulen (UGent) , Juan Fraire (UGent) , Laurens Raes, Ellen De Meester (UGent) , Sarah De Keulenaer (UGent) , Filip Van Nieuwerburgh (UGent) , Stefaan De Smedt (UGent) , Katrien Remaut (UGent) and Kevin Braeckmans (UGent)

(2018) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 19(8).

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A1
open access

A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq

Sandra Steyaert (UGent) , Jolien Diddens, Jeroen Galle (UGent) , Ellen De Meester (UGent) , Sarah De Keulenaer (UGent) , Antje Bakker, Nina Sohnius-Wilhelmi, Carolina Frankl-Vilches, Annemie Van der Linden, Wim Van Criekinge (UGent) , et al.

(2016) SCIENTIFIC REPORTS. 6.

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Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies

Bart Broeckx (UGent) , Frank Coopman (UGent) , Geert Verhoeven (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Valérie Bavegems (UGent) , Pascale Smets (UGent) , Bernadette Van Ryssen (UGent) , Filip Van Nieuwerburgh (UGent) and Dieter Deforce (UGent)

(2016) ANIMAL GENETICS. 47(2). p.200-207

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Conference Paper
C3
open access

Whole exome sequencing the dog

Bart Broeckx (UGent) , Christophe Hitte, Frank Coopman (UGent) , Geert Verhoeven (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Thomas Derrien, Jessica Alfoldi, Kerstin Lindblad-Toh, Tim Bosmans (UGent) , et al.

(2015) The 8th international conference on advances in canine and feline genomics and inherited disease : conference proceedings and abstract booklet. p.78-78

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A1
open access

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

Bart Broeckx (UGent) , Christophe Hitte, Frank Coopman (UGent) , Geert Verhoeven (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Thomas Derrien, Jessica Alfoldi, Kerstin Lindblad-Toh, Tim Bosmans (UGent) , et al.

(2015) SCIENTIFIC REPORTS. 5.

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A1
open access

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

Jeroen Crappé (UGent) , Elvis Ndah (UGent) , Alexander Koch (UGent) , Sandra Steyaert (UGent) , Daria Fijalkowska (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Tim De Meyer (UGent) , Wim Van Criekinge (UGent) , Petra Van Damme (UGent) , et al.

(2015) NUCLEIC ACIDS RESEARCH. 43(5).

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A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

Alexander Koch (UGent) , Daria Fijalkowska (UGent) , Sandra Steyaert (UGent) , Elvis Ndah (UGent) , Jeroen Crappé (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Ming Ma, Ben Shen, Kris Gevaert (UGent) , et al.

(2014) PROTEOMICS. 14(23-24). p.2688-2698

Academic Bibliography

Ellen De Meester

DNA methylation regulates transcription factor-specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon

ADAR1 interaction with Z-RNA promotes editing of endogenous double-stranded RNA and prevents MDA5-dependent immune activation

Distinct transcriptome signatures of Helicobacter suis and Helicobacter heilmannii strains upon adherence to human gastric epithelial cells

Photothermally triggered endosomal escape and its influence on transfection efficiency of gold-functionalized JetPEI/pDNA nanoparticles

A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq

Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies

Whole exome sequencing the dog

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

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