Ellen De Meester

Miscellaneous
open access

Predicting subclonal TP53 mutations from tumor spatial transcriptomics data using a graph convolutional neural network

Tom Luijts (UGent) , Sofie Hoogstoel (UGent) , Eden Pappaert (UGent) , Ellen De Meester (UGent) , Filip Van Nieuwerburgh (UGent) , Evelien Van Hamme (UGent) , Sofie De Schepper (UGent) , Wouter Willaert (UGent) , Anne Vral (UGent) , Isabelle Hoorens (UGent) , et al.

(2026)

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Miscellaneous

Integrated single-cell analysis reveals interferon-driven immune signatures in a DENV1 human infection model

Anne-Sofie Vermeersch (UGent) , T.W. Verdonckt, C. Struyfs, Ellen De Meester (UGent) , A. Waickman, S.J. Thomas, K.K. Ariën, O. Lagatie and Filip Van Nieuwerburgh (UGent)

(2026) bioRxiv.

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Journal Article
A1
open access

Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

An Vanden Broeck, Tim Meese, Pieter Verschelde, Karen Cox, Berthold Heinze, Dieter Deforce (UGent) , Ellen De Meester (UGent) and Filip Van Nieuwerburgh (UGent)

(2024) BMC BIOLOGY. 22(1).

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The multi-omics single-cell landscape of sinus mucosa in uncontrolled severe chronic rhinosinusitis with nasal polyps

Zhaofeng Xu (UGent) , Yanran Huang (UGent) , Tim Meese, Sharon Van Nevel, Gabriële Holtappels (UGent) , Stijn Vanhee (UGent) , Barbara M. Bröker, Zhengqi Li, Ellen De Meester (UGent) , Natalie De Ruyck (UGent) , et al.

(2023) CLINICAL IMMUNOLOGY. 256.

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DNA methylation regulates transcription factor-specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon

Jolien Diddens, Louis Coussement (UGent) , Carolina Frankl-Vilches, Gaurav Majumdar, Sandra Steyaert (UGent) , Sita M. Ter Haar, Jeroen Galle (UGent) , Ellen De Meester (UGent) , Sarah De Keulenaer (UGent) , Wim Van Criekinge (UGent) , et al.

(2021) FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 9.

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Journal Article
A1
open access

ADAR1 interaction with Z-RNA promotes editing of endogenous double-stranded RNA and prevents MDA5-dependent immune activation

Richard de Reuver (UGent) , Evelien Dierick (UGent) , Bartosz Wiernicki, Katrien Staes (UGent) , Leen Seys (UGent) , Ellen De Meester (UGent) , Tuur Muyldermans (UGent) , Alexander Botzki (UGent) , Bart Lambrecht (UGent) , Filip Van Nieuwerburgh (UGent) , et al.

(2021) CELL REPORTS. 36(6).

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Journal Article
A1
open access

Distinct transcriptome signatures of Helicobacter suis and Helicobacter heilmannii strains upon adherence to human gastric epithelial cells

Helena Berlamont, Chloë De Witte (UGent) , Eva Bauwens, Hannah Min Jou (UGent) , Richard Ducatelle (UGent) , Ellen De Meester (UGent) , Yannick Gansemans (UGent) , Dieter Deforce (UGent) , Filip Van Nieuwerburgh (UGent) , Freddy Haesebrouck (UGent) , et al.

(2020) VETERINARY RESEARCH. 51(1).

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Journal Article
A1
open access

Photothermally triggered endosomal escape and its influence on transfection efficiency of gold-functionalized JetPEI/pDNA nanoparticles

Lotte Vermeulen (UGent) , Juan Fraire (UGent) , Laurens Raes, Ellen De Meester (UGent) , Sarah De Keulenaer (UGent) , Filip Van Nieuwerburgh (UGent) , Stefaan De Smedt (UGent) , Katrien Remaut (UGent) and Kevin Braeckmans (UGent)

(2018) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 19(8).

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Journal Article
A1
open access

A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq

Sandra Steyaert (UGent) , Jolien Diddens, Jeroen Galle (UGent) , Ellen De Meester (UGent) , Sarah De Keulenaer (UGent) , Antje Bakker, Nina Sohnius-Wilhelmi, Carolina Frankl-Vilches, Annemie Van der Linden, Wim Van Criekinge (UGent) , et al.

(2016) SCIENTIFIC REPORTS. 6.

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Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies

Bart Broeckx (UGent) , Frank Coopman (UGent) , Geert Verhoeven (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Valérie Bavegems (UGent) , Pascale Smets (UGent) , Bernadette Van Ryssen (UGent) , Filip Van Nieuwerburgh (UGent) and Dieter Deforce (UGent)

(2016) ANIMAL GENETICS. 47(2). p.200-207

Academic Bibliography

Ellen De Meester

Predicting subclonal TP53 mutations from tumor spatial transcriptomics data using a graph convolutional neural network

Integrated single-cell analysis reveals interferon-driven immune signatures in a DENV1 human infection model

Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

The multi-omics single-cell landscape of sinus mucosa in uncontrolled severe chronic rhinosinusitis with nasal polyps

DNA methylation regulates transcription factor-specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon

ADAR1 interaction with Z-RNA promotes editing of endogenous double-stranded RNA and prevents MDA5-dependent immune activation

Distinct transcriptome signatures of Helicobacter suis and Helicobacter heilmannii strains upon adherence to human gastric epithelial cells

Photothermally triggered endosomal escape and its influence on transfection efficiency of gold-functionalized JetPEI/pDNA nanoparticles

A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq

Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies

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