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Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance
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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices
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Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study
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Whole-genome sequencing-based antimicrobial resistance characterization and phylogenomic investigation of 19 multidrug-resistant and extended-spectrum beta-lactamase-positive escherichia coli strains collected from hospital patients in Benin in 2019
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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations
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Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks
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Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies
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Case report : multidrug resistant Raoultella ornithinolytica in a septicemic calf
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Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak
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Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates