Herman De Beukelaer

Journal Article
A1
open access

JASPAR 2026 : expansion of transcription factor binding profiles and integration of deep learning models

Damla Ovek Baydar, Ieva Rauluseviciute, Dina R Aronsen, Romain Blanc-Mathieu, Ine Bonthuis, Herman De Beukelaer (UGent) , Katalin Ferenc, Alice Jegou, Vipin Kumar, Roza Berhanu Lemma, et al.

(2026) NUCLEIC ACIDS RESEARCH. 54(D1). p.D184-D193

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Journal Article
A1
open access

Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits

Perla Novais de Oliveira, Leonardo Perez de Souza, Pedro Boscariol Ferreira, Jean Phillippe Mauxion, Luis Felipe Correa da Silva, Ana Isabela Chang, Marina de Lyra Soriano Saleme, Feng Zhu, Sara Selma Garcia (UGent) , Herman De Beukelaer (UGent) , et al.

(2025) PLANT BIOTECHNOLOGY JOURNAL. 23(9). p.3540-3560

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Journal Article
A1
open access

Core Hunter 3 : flexible core subset selection

Herman De Beukelaer (UGent) , Guy F. Davenport and Veerle Fack (UGent)

(2018) BMC BIOINFORMATICS. 19.

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PhD Thesis
open access

Discrete optimization algorithms for marker-assisted plant breeding

Herman De Beukelaer (UGent)

(2017)

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Moving beyond managing realized genomic relationship in long-term genomic selection

Herman De Beukelaer (UGent) , Yvonne Badke, Veerle Fack (UGent) and Geert De Meyer

(2017) GENETICS. 206(2). p.1127-1138

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JAMES : an object-oriented Java framework for discrete optimization using local search metaheuristics

Herman De Beukelaer (UGent) , Guy F Davenport, Geert De Meyer and Veerle Fack (UGent)

(2017) SOFTWARE-PRACTICE & EXPERIENCE. 47(6). p.921-938

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JAMES : a modern object-oriented Java framework for discrete optimization using local search metaheuristics

Herman De Beukelaer (UGent) , Guy F Davenport, Geert De Meyer and Veerle Fack (UGent)

(2015) Conference proceedings : 4th international symposium & 26th national conference on operational research. p.134-138

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Journal Article
A1
open access

Heuristic exploitation of genetic structure in marker-assisted gene pyramiding problems

Herman De Beukelaer (UGent) , Geert De Meyer and Veerle Fack (UGent)

(2015) BMC GENETICS. 16.

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Journal Article
A1
open access

Core Hunter II : fast core subset selection based on multiple genetic diversity measures using Mixed Replica search

Herman De Beukelaer (UGent) , Petr Smýkal, Guy F Davenport and Veerle Fack (UGent)

(2012) BMC BIOINFORMATICS. 13.

Academic Bibliography

Herman De Beukelaer

JASPAR 2026 : expansion of transcription factor binding profiles and integration of deep learning models

Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits

Core Hunter 3 : flexible core subset selection

Discrete optimization algorithms for marker-assisted plant breeding

Moving beyond managing realized genomic relationship in long-term genomic selection

JAMES : an object-oriented Java framework for discrete optimization using local search metaheuristics

JAMES : a modern object-oriented Java framework for discrete optimization using local search metaheuristics

Heuristic exploitation of genetic structure in marker-assisted gene pyramiding problems

Core Hunter II : fast core subset selection based on multiple genetic diversity measures using Mixed Replica search

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