Assia Saltykova
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- PhD Thesis
- open access
Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety
(2022) -
- Journal Article
- A1
- open access
Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies
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- Journal Article
- A1
- open access
Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak
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- Journal Article
- A1
- open access
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
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- Journal Article
- A1
- open access
A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine
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- Journal Article
- A1
- open access
Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study
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- Journal Article
- A1
- open access
Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept
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The Chara genome : secondary complexity and implications for plant terrestrialization
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- Journal Article
- A1
- open access
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-
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Identifying prokaryotic consortia that live in close interactions with algae