Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Assia Saltykova

Faculty of Sciences > Department of Plant Biotechnology and Bioinformatics

Work address: Technologiepark Zwijnaarde 71
9052 Zwijnaarde
Email: Assia.Saltykova@UGent.be

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Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Sarah Denayer, Bavo Verhaegen (UGent) , Kevin Vanneste (UGent) , Nancy H. C. Roosens, Denis Pierard, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2021) FRONTIERS IN MICROBIOLOGY. 12.
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Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Wesley Mattheus, Valeska Laisnez, Bavo Verhaegen, Nancy H. C. Roosens, Kevin Vanneste (UGent) , Naiima Hammami, Brigitte Pochet, Vera Cantaert, et al.

(2021) MICROBIAL GENOMICS. 7(4).
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Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Bas Berbers, Assia Saltykova (UGent) , Cristina Garcia-Graells, Patrick Philipp, Fabrice Arella, Kathleen Marchal (UGent) , Raf Winand, Kevin Vanneste, Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2020) SCIENTIFIC REPORTS. 10(1).
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A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) MICROORGANISMS. 8(8).
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Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Assia Saltykova (UGent) , Florence Buytaers (UGent) , Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 21(16).
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Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept

Assia Saltykova (UGent) , Wesley Mattheus, Sophie Bertrand, Nancy HC Roosens, Kathleen Marchal (UGent) and Sigrid CJ De Keersmaecker

(2019) FRONTIERS IN MICROBIOLOGY. 10.
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The Chara genome : secondary complexity and implications for plant terrestrialization

Tomoaki Nishiyama, Hidetoshi Sakayama, Jan de Vries, Henrik Buschmann, Denis Saint-Marcoux, Kristian K Ullrich, Fabian B Haas, Lisa Vanderstraeten (UGent) , Dirk Becker, Daniel Lang, et al.

(2018) CELL. 174(2). p.448-464
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Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-

Assia Saltykova (UGent) , Véronique Wuyts, Wesley Mattheus, Sophie Bertrand, Nancy HC Roosens, Kathleen Marchal (UGent) and Sigrid De Keersmaecker

(2018) PLOS ONE. 13(2).
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- Conference Paper
- C3
Identifying prokaryotic consortia that live in close interactions with algae

Assia Saltykova (UGent) , Sergio Pulido-Tamayo, Marie Pazoutova, Stefan A Rensing, Tomoaki Nishiyama, Yves Van de Peer (UGent) , Kathleen Marchal (UGent) and Stephane Rombauts (UGent)

(2015) EUROPEAN JOURNAL OF PHYCOLOGY. 50(suppl. 1). p.145-146