Jasper Anckaert

Transcriptomic signatures of human single skeletal muscle fibers in response to high-intensity interval exercise

Thibaux Van der Stede (UGent) , Alexia Van de Loock (UGent) , Eline Lievens (UGent) , Nurten Yigit (UGent) , Jasper Anckaert (UGent) , Ruud Van Thienen (UGent) , Anneleen Weyns (UGent) , Pieter Mestdagh (UGent) , Jo Vandesompele (UGent) and Wim Derave (UGent)

(2024) AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY. 327(5). p.C1249-C1262

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A1
open access

Characterizing the cell-free transcriptome in a humanized diffuse large B-cell lymphoma patient-derived tumor xenograft model for RNA-based liquid biopsy in a preclinical setting

Philippe Decruyenaere (UGent) , Willem Daneels (UGent) , Annelien Morlion (UGent) , Kimberly Verniers (UGent) , Jasper Anckaert (UGent) , Jan Tavernier (UGent) , Fritz Offner (UGent) and Jo Vandesompele (UGent)

(2024) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 25(18).

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A1
open access

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Carolina de Carvalho Nunes, Jasper Anckaert (UGent) , Fanny De Vloed (UGent) , Jolien De Wyn, Kaat Durinck (UGent) , Jo Vandesompele (UGent) , Franki Speleman (UGent) and Vanessa Vermeirssen (UGent)

(2024) PLOS ONE. 19(1).

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Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Marieke Vromman (UGent) , Jasper Anckaert (UGent) , Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu, Trees-Juen Chuang, Roozbeh Dehghannasiri, Christoph Dieterich, Xin Dong, et al.

(2023) NATURE METHODS. 20(8). p.1159-1169

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Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study

Anneleen Decock (UGent) , Olivier De Wever (UGent) , Celine Everaert (UGent) , Hetty Helsmoortel (UGent) , An Hendrix (UGent) , Pieter Mestdagh (UGent) , Annelien Morlion (UGent) , Jo Vandesompele (UGent) , Ruben Van Paemel (UGent) , Francisco Avila Cobos (UGent) , et al.

(2023) PrIOMiC-OncoPoint Symposium 2023, Abstracts.

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Conference Paper
C3
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Dramatic impact of blood collection tube and RNA purification method on extracellular RNA transcriptomes

Jasper Anckaert (UGent) , Francisco Avila Cobos (UGent) , Anneleen Decock (UGent) , Philippe Decruyenaere (UGent) , Jill Deleu (UGent) , Katleen De Preter (UGent) , Olivier De Wever (UGent) , Jilke De Wilde (UGent) , Bert Dhondt, Thibaut D'huyvetter (UGent) , et al.

(2023) 6th ACTC Advances in Circulating Tumor Cells 'Liquid Biopsy and Precision Oncology : Where do we stand now?' Book of Abstracts.

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Mammalian target of rapamycin inhibition enhances delivery and activity of antisense oligonucleotides in uveal melanoma cells

Shanna Dewaele, Louis Delhaye (UGent) , Boel De Paepe (UGent) , Bram Bogaert, Ramiro Martinez (UGent) , Jasper Anckaert (UGent) , Nurten Yigit (UGent) , Justine Nuytens (UGent) , Rudy Van Coster (UGent) , Sven Eyckerman (UGent) , et al.

(2023) NUCLEIC ACID THERAPEUTICS. 33(4). p.248-264

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Conference Paper
C3
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Exploration of neuroblastoma xenograft models for the analysis of tumoral cell-free RNA in murine blood plasma

Jill Deleu (UGent) , Hanne Van Droogenbroeck (UGent) , Jasper Anckaert (UGent) , Jilke De Wilde (UGent) , Kaat Durinck (UGent) , Liselot Mus (UGent) , Justine Nuytens (UGent) , Muhammad Rishfi (UGent) , Kathleen Schoofs (UGent) , Franki Speleman (UGent) , et al.

(2023) Advances in Neuroblastoma Research (ANR) Meeting 2023, Abstracts.

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Journal Article
A2
open access

Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma

Jill Deleu (UGent) , Hanne Van Droogenbroeck (UGent) , Jasper Anckaert (UGent) , Anneleen Decock (UGent) , Jilke De Wilde (UGent) , Kaat Durinck (UGent) , Liselot Mus (UGent) , Justine Nuytens (UGent) , Muhammad Rishfi (UGent) , Kathleen Schoofs (UGent) , et al.

(2023) EXRNA. 5(2).

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A1
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Exploring the cell-free total RNA transcriptome in diffuse large B-cell lymphoma and primary mediastinal B-cell lymphoma patients as biomarker source in blood plasma liquid biopsies

Philippe Decruyenaere (UGent) , Edoardo Giuili, Kimberly Verniers (UGent) , Jasper Anckaert (UGent) , Katrien De Grove (UGent) , Malaïka Van der Linden (UGent) , Dries Deeren, Jo Van Dorpe (UGent) , Fritz Offner (UGent) and Jo Vandesompele (UGent)

(2023) FRONTIERS IN ONCOLOGY. 13.

Academic Bibliography

Jasper Anckaert

Transcriptomic signatures of human single skeletal muscle fibers in response to high-intensity interval exercise

Characterizing the cell-free transcriptome in a humanized diffuse large B-cell lymphoma patient-derived tumor xenograft model for RNA-based liquid biopsy in a preclinical setting

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study

Dramatic impact of blood collection tube and RNA purification method on extracellular RNA transcriptomes

Mammalian target of rapamycin inhibition enhances delivery and activity of antisense oligonucleotides in uveal melanoma cells

Exploration of neuroblastoma xenograft models for the analysis of tumoral cell-free RNA in murine blood plasma

Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma

Exploring the cell-free total RNA transcriptome in diffuse large B-cell lymphoma and primary mediastinal B-cell lymphoma patients as biomarker source in blood plasma liquid biopsies

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