Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. Sven Degroeve

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

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Toward an integrated machine learning model of a proteomics experiment

Benjamin A. Neely, Viktoria Dorfer, Lennart Martens (UGent) , Isabell Bludau, Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) , Eric W. Deutsch, Siegfried Gessulat, Lukas Kaell, Pawel Palczynski, et al.

(2023) JOURNAL OF PROTEOME RESEARCH.
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- Miscellaneous
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PhosphoLingo : protein language models for phosphorylation site prediction

Jasper Zuallaert (UGent) , Pathmanaban Ramasamy (UGent) , Robbin Bouwmeester (UGent) , Nico Callewaert (UGent) and Sven Degroeve (UGent)

(2023) BioRXiv.
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psm_utils : a high-level python API for parsing and handling peptide-spectrum matches and proteomics search results

Ralf Gabriels (UGent) , Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 22(2). p.557-560
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MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Aurélie Hirschler, Christine Carapito, Sven Degroeve (UGent) , Lennart Martens (UGent) and Ralf Gabriels (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).
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- C3
Orthogonal proteomics methods to unravel the HOTAIR interactome

Louis Delhaye (UGent) , Edith De Bruycker (UGent) , Pieter-Jan Volders (UGent) , Daria Fijalkowska (UGent) , Delphine De Sutter (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Pieter Mestdagh (UGent) and Sven Eyckerman (UGent)

(2022) Next-Generation Protein Analysis and Detection (4th edition), Abstracts.
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Ionbot : a novel, innovative and sensitive machine learning approach to LC-MS/MS peptide identification

Sven Degroeve (UGent) , Ralf Gabriels (UGent) , Kevin Velghe (UGent) , Robbin Bouwmeester (UGent) , Natalia Tichshenko (UGent) and Lennart Martens (UGent)

(2022) BIORXIV.
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Orthogonal proteomics methods to unravel the HOTAIR interactome

Louis Delhaye (UGent) , Edith De Bruycker (UGent) , Pieter-Jan Volders (UGent) , Daria Fijalkowska (UGent) , Delphine De Sutter (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Pieter Mestdagh (UGent) and Sven Eyckerman (UGent)

(2022) SCIENTIFIC REPORTS. 12(1).
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Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone (UGent) , Pathmanaban Ramasamy (UGent) , Jasper Zuallaert (UGent) , Robbin Bouwmeester (UGent) , Berre Van Moer (UGent) , Davy Maddelein (UGent) , Demet Turan (UGent) , Niels Hulstaert (UGent) , Hannah Eeckhaut (UGent) , Elien Vandermarliere (UGent) , et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Niels Hulstaert (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2021) NATURE METHODS. 18(11). p.1363-+
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MS²DIP : highly accurate MS2 spectrum prediction for modified peptides & MS²Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Jasper Zuallaert (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2021) 69th ASMS Conference on Mass Spectrometry and Allied Topics, Abstracts.

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