Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Robbin Bouwmeester

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0001-6807-7029

Add to list
- Journal Article
- A1
- open access
Transfer learning in DeepLC improves LC retention time prediction across substantially different modifications and setups

Robbin Bouwmeester (UGent) , Alireza Nameni (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Kevin Velghe (UGent) , Vladimir Gorshkov, Pelayo A. Penanes, Frank Kjeldsen, Magali Rompais, Christine Carapito, et al.

(2026) NATURE COMMUNICATIONS. 17(1).
Add to list
- Journal Article
- A1
- open access
The Escherichia coli PeptideAtlas build : characterizing the observed Escherichia coli pan-proteome and its post-translational modifications

Caroline Jachmann (UGent) , Zhi Sun, Kevin Velghe (UGent) , Florence Arsène-Ploetze, Aurélie Hirschler, Jasper Zuallaert (UGent) , Christine Carapito, Robbin Bouwmeester (UGent) , Kay Nieselt, Eric W. Deutsch, et al.

(2026) JOURNAL OF PROTEOME RESEARCH. 25(2). p.1027-1041
Add to list
- Journal Article
- A1
- open access
Koina : democratizing machine learning for proteomics research

Ludwig Lautenbacher, Kevin L. Yang, Tobias Kockmann, Christian Panse, Wassim Gabriel, Dulguun Bold, Elias Kahl, Matthew Chambers, Brendan X. MacLean, Kai Li, et al.

(2025) NATURE COMMUNICATIONS. 16(1).
Add to list
- Journal Article
- A1
- open access
Potential of proteomics in forensic phenotyping : a focus on biological sex estimation

Shirin Alex, Ruben Almey (UGent) , Rachel Sian Dennis, Olivier Tytgat, Robbin Bouwmeester (UGent) , Dieter Deforce (UGent) , Marcel De Puit, Maarten Dhaenens (UGent) and Laura De Clerck (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(10). p.4888-4899
Add to list
- Journal Article
- A1
- open access
Collisional cross-section prediction for multiconformational peptide ions with IM2Deep

Robbe Devreese (UGent) , Alireza Nameni (UGent) , Arthur Declercq (UGent) , Emmy Terryn, Ralf Gabriels (UGent) , Francis Impens (UGent) , Kris Gevaert (UGent) , Lennart Martens (UGent) and Robbin Bouwmeester (UGent)

(2025) ANALYTICAL CHEMISTRY. 97(28). p.15113-15121
Add to list
Classification of collagens via peptide ambiguation, in a paleoproteomic LC-MS/MS-based taxonomic pipeline

Ian Engels (UGent) , Alexandra Burnett (UGent) , Prudence Robert (UGent) , Camille Pironneau (UGent) , Grégory Abrams (UGent) , Robbin Bouwmeester (UGent) , Peter Van Der Plaetsen, Kévin Di Modica, Marcel Otte, Lawrence Guy Straus, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.1907-1925
Add to list
- Journal Article
- A1
- open access
Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

Patrick Willems (UGent) , Fabien Henri Thery (UGent) , Laura Van Moortel (UGent) , Margaux De Meyer (UGent) , An Staes (UGent) , Adillah Gul (UGent) , Lyudmila Kovalchuke (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Robbin Bouwmeester (UGent) , et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.2141-2151
Add to list
- Journal Article
- A1
- open access
TIMS2Rescore : a data dependent acquisition-parallel accumulation and serial fragmentation-optimized data-driven rescoring pipeline based on MS2Rescore

Arthur Declercq (UGent) , Robbe Devreese (UGent) , Jonas Scheid, Caroline Jachmann (UGent) , Tim Van Den Bossche (UGent) , Annica Preikschat, David Gomez-Zepeda, Jeewan Babu Rijal, Aurelie Hirschler, Jonathan R. Krieger, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(3). p.1067-1076
Add to list
Predicting ion mobility collision cross sections and assessing prediction variation by combining conventional and data driven modeling

Robbin Bouwmeester (UGent) , Keith Richardson, Richard Denny, Ian D. Wilson, Sven Degroeve (UGent) , Lennart Martens (UGent) and Johannes P.C. Vissers

(2024) TALANTA. 274.
Add to list
- Journal Article
- A1
- open access
Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links

Arslan Siraj, Robbin Bouwmeester (UGent) , Arthur Declercq (UGent) , Luisa Welp, Aleksandar Chernev, Alexander Wulf, Henning Urlaub, Lennart Martens (UGent) , Sven Degroeve (UGent) , Oliver Kohlbacher, et al.

(2024) PROTEOMICS. 24(8).

1
2
3
4
5

Next →