Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Robbin Bouwmeester

Faculty of Medicine and Health Sciences > Department of Biomolecular Medicine

ORCID iD: 0000-0001-6807-7029

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Benefit of in silico predicted spectral libraries in data-independent acquisition data analysis workflows

An Staes (UGent) , Teresa Maia (UGent) , Sara Dufour (UGent) , Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Lennart Martens (UGent) , Kris Gevaert (UGent) , Francis Impens (UGent) and Simon Devos (UGent)

(2024) JOURNAL OF PROTEOME RESEARCH. 23(6). p.2078-2089
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- Journal Article
- A1
- open access
MS²Rescore 3.0 is a modular, flexible, and user-friendly platform to boost peptide identifications, as showcased with MS Amanda 3.0

Louise M. Buur, Arthur Declercq (UGent) , Marina Strobl, Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Viktoria Dorfer and Ralf Gabriels (UGent)

(2024) JOURNAL OF PROTEOME RESEARCH.
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- Journal Article
- A1
- open access
The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions

Myrsini Sakarika (UGent) , Frederiek-Maarten Kerckhof (UGent) , Lotte Van Peteghem (UGent) , Alexandra Pinto Martins Pereira (UGent) , Tim Van Den Bossche (UGent) , Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Delphi Van Haver (UGent) , Barbara Ulčar (UGent) , Lennart Martens (UGent) , et al.

(2023) MICROBIAL CELL FACTORIES. 22(1).
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- Journal Article
- A1
- open access
Updated MS²PIP web server supports cutting-edge proteomics applications

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Cristina Chiva, Eduard Sabido, Aurelie Hirschler, Christine Carapito, Lennart Martens (UGent) , Sven Degroeve (UGent) and Ralf Gabriels (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(W1). p.W338-W342
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- Journal Article
- A1
- open access
Toward an integrated machine learning model of a proteomics experiment

Benjamin A. Neely, Viktoria Dorfer, Lennart Martens (UGent) , Isabell Bludau, Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) , Eric W. Deutsch, Siegfried Gessulat, Lukas Kaell, Pawel Palczynski, et al.

(2023) JOURNAL OF PROTEOME RESEARCH. 22(3). p.681-696
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- Miscellaneous
- open access
PhosphoLingo : protein language models for phosphorylation site prediction

Jasper Zuallaert (UGent) , Pathmanaban Ramasamy (UGent) , Robbin Bouwmeester (UGent) , Nico Callewaert (UGent) and Sven Degroeve (UGent)

(2023) BioRXiv.
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- Journal Article
- A1
- open access
ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics

Tobias G. Rehfeldt, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno and Eric W. Deutsch

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.632-636
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- Journal Article
- A1
- open access
Machine learning on large-scale proteomics data identifies tissue and cell-type specific proteins

Tine Claeys (UGent) , Maxime Menu, Robbin Bouwmeester (UGent) , Kris Gevaert (UGent) and Lennart Martens (UGent)

(2023) JOURNAL OF PROTEOME RESEARCH. 22(4). p.1181-1192
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- Miscellaneous
- open access
FAVA : high-quality functional association networks inferred from scRNA-seq and proteomics data

Mikaela Koutrouli, Pau Piera Líndez, Katerina Nastou, Robbin Bouwmeester (UGent) , Simon Rasmussen, Lennart Martens (UGent) and Lars Juhl Jensen

(2023) BioRxiv.
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- Journal Article
- A1
- open access
psm_utils : a high-level python API for parsing and handling peptide-spectrum matches and proteomics search results

Ralf Gabriels (UGent) , Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 22(2). p.557-560

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