- ORCID iD
- 0000-0002-7114-6248
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- Journal Article
- open access
Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes
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- Journal Article
- A1
- open access
CD8 memory precursor cell generation is a continuous process
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- Journal Article
- A1
- open access
Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition
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- Journal Article
- A1
- open access
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
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- Journal Article
- A1
- open access
Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells
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- Journal Article
- A1
- open access
TinGa : fast and flexible trajectory inference with Growing Neural Gas
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A scalable SCENIC workflow for single-cell gene regulatory network analysis
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NicheNet : modeling intercellular communication by linking ligands to target genes
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- Journal Article
- A1
- open access
Trajectory-based differential expression analysis for single-cell sequencing data
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Network inference from single-cell transcriptomic data
(2019) Gene regulatory networks : methods and protocols. In Methods in Molecular Biology 1883. p.235-249 -
- PhD Thesis
- open access
Developing and benchmarking methods for analysing transcriptomics data
(2019) -
- Journal Article
- A1
- open access
Essential guidelines for computational method benchmarking
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A comparison of single-cell trajectory inference methods
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Dynbenchmark : accuracy, scalability, robustness and usability of single-cell trajectory inference methods
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- Journal Article
- A1
- open access
The transcription factor ZEB2 is required to maintain the tissue-specific identities of macrophages
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- Journal Article
- A1
- open access
A comprehensive evaluation of module detection methods for gene expression data
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Computational methods for trajectory inference from single-cell transcriptomics
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Improving marker gene discovery from high-dimensional single-cell snapshot data
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Unbiased modelling of dynamic processes with single-cell RNA-sequencing
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Unbiased modelling of dynamic processes with single-cell RNA-sequencing