dr. Tim Van Den Bossche

Journal Article
A1
open access

Proceedings of the EuBIC-MS developers meeting 2023

Pedro Beltrao, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Tanja Holstein (UGent) , Tobias Kockmann, Alireza Nameni (UGent) , Christian Panse, Ralph Schlapbach, Ludwig Lautenbacher, Matthias Mattanovich, et al.

(2024) JOURNAL OF PROTEOMICS. 305.

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Book Chapter

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) and Bart Mesuere (UGent)

(2024) Protein bioinformatics. In Methods in Molecular Biology 2836. p.183-215

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Journal Article
A1
open access

Communicating mass spectrometry quality information in mzQC with Python, R, and Java

Chris Bielow, Nils Hoffmann, David Jimenez-Morales, Tim Van Den Bossche (UGent) , Juan Antonio Vizcaino, David L. Tabb, Wout Bittremieux and Mathias Walzer

(2024) JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY.

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Miscellaneous
open access

PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2024)

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Journal Article
A1
open access

Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species

Lydia Kipping, Nico Jehmlich, Julia Moll, Matthias Noll, Martin M Gossner, Tim Van Den Bossche (UGent) , Pascal Edelmann, Werner Borken, Martin Hofrichter and Harald Kellner

(2024) ISME JOURNAL. 18(1).

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Journal Article
A1
open access

The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS) : an open community for bioinformatics training and research

Wout Bittremieux, David Bouyssié, Viktoria Dorfer, Marie Locard‐Paulet, Yasset Perez‐Riverol, Veit Schwämmle, Julian Uszkoreit and Tim Van Den Bossche (UGent)

(2024) RAPID COMMUNICATIONS IN MASS SPECTROMETRY.

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Journal Article
A1
open access

Blood-borne extracellular vesicles of bacteria and intestinal cells in patients with psychotic disorders

Mette Elise Tunset, Hanne Haslene-Hox, Tim Van Den Bossche (UGent) , Susan Maleki, Arne Vaaler and Daniel Kondziella

(2023) NORDIC JOURNAL OF PSYCHIATRY. 77(7). p.686-695

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Journal Article
A1
open access

The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions

Myrsini Sakarika (UGent) , Frederiek-Maarten Kerckhof (UGent) , Lotte Van Peteghem (UGent) , Alexandra Pinto Martins Pereira (UGent) , Tim Van Den Bossche (UGent) , Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Delphi Van Haver (UGent) , Barbara Ulčar (UGent) , Lennart Martens (UGent) , et al.

(2023) MICROBIAL CELL FACTORIES. 22(1).

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Miscellaneous
open access

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) and Bart Mesuere (UGent)

(2023) ARXIV.

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Journal Article
A1
open access

Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses

Pieter Verschaffelt (UGent) , Alessandro Tanca, Marcello Abbondio, Tim Van Den Bossche (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) and Bart Mesuere (UGent)

(2023) JOURNAL OF PROTEOME RESEARCH. 22(8). p.2620-2628

Academic Bibliography

dr. Tim Van Den Bossche

Proceedings of the EuBIC-MS developers meeting 2023

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Communicating mass spectrometry quality information in mzQC with Python, R, and Java

PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways

Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species

The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS) : an open community for bioinformatics training and research

Blood-borne extracellular vesicles of bacteria and intestinal cells in patients with psychotic disorders

The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses

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