Department of Applied mathematics, computer science and statistics
3454 publications
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Novel statistical strategies for differential PTM abundance analysis in proteomics
(2024) -
msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level
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- Journal Article
- open access
Reproducing predictive learning analytics in CS1
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Towards abdominal 3-D scene rendering from laparoscopy surgical videos using NeRFs
(2024) MACHINE LEARNING IN MEDICAL IMAGING, MLMI 2023, PT I. In Lecture notes in computer science 14348. p.83-93 -
Linguistic convergence in the European Parliament : a correspondence analysis of n-grams used by members of parliament and interpreters
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Optimizing computational cytometry tools for clinical applications
(2024) -
Orthosymplectic Z<sub>2</sub>xZ<sub>2</sub> -graded Lie superalgebras and parastatistics
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- Journal Article
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Discovering and exploring cases of educational source code plagiarism with Dolos
(2024) -
Dealing with time‐dependent exposures and confounding when defining and estimating attributable fractions : revisiting estimands and estimators
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- Journal Article
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An introduction to adversarially robust deep learning
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- Journal Article
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Assumption-lean cox regression
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On the granular representation of fuzzy quantifier-based fuzzy rough sets
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Classification of minimal blocking sets in PG(2,9)
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- Journal Article
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Inverse probability of treatment weighting with generalized linear outcome models for doubly robust estimation
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- Journal Article
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Adjusting for Time-Varying Treatment Switches in Randomized Clinical Trials: The Danger of Extrapolation and How to Address It
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- Journal Article
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The incremental healthcare cost associated with cancer in Belgium : a registry‐based data analysis
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- Journal Article
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Digging into the lettuce cold-specific root microbiome in search of chilling stress tolerance-conferring plant growth-promoting bacteria
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- Journal Article
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Blink : an educational software debugger for Scratch
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- Journal Article
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Single-cell molecular profiling using ex vivo functional readouts fuels precision oncology in glioblastoma
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Gut inflammation in axial spondyloarthritis patients is characterized by a marked type 17 skewed mucosal innate‐like T cell signature
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- Journal Article
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The Wiskott–Aldrich syndrome protein is required for positive selection during T-cell lineage differentiation
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Blink : an educational software debugger for Scratch
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Dodona : learn to code with a virtual co-teacher that supports active learning
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- Journal Article
- A1
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Ferroptosis and pyroptosis signatures in critical COVID-19 patients
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- Journal Article
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Semiparametric estimation of probabilistic index models : efficiency and bias
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- Journal Article
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Rejoinder to discussions on 'Instrumental variable estimation of the causal hazard ratio'
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- Journal Article
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Fuzzy rough nearest neighbour methods for aspect-based sentiment analysis
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- Journal Article
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Coaching doctors to improve ethical decision-making in adult hospitalised patients potentially receiving excessive treatment : study protocol for a stepped wedge cluster randomised controlled trial
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- Journal Article
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Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division
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- Journal Article
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Dysregulation of developmental and cell type-specific expression of glycoconjugates on hematopoietic cells : a new characteristic of myelodysplastic neoplasms (MDS)
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- Journal Article
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QT–GWAS : a novel method for unveiling biosynthetic loci affecting qualitative metabolic traits
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- Journal Article
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Parameter estimation for models of chemical reaction networks from experimental data of reaction rates
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Data-based ranking and prediction in football
(2023) -
- Journal Article
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On classical Z(2) x Z(2)-graded Lie algebras
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- Journal Article
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How to make sense of 3D representations for plant phenotyping : a compendium of processing and analysis techniques
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- Journal Article
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The health and economic burden of musculoskeletal disorders in Belgium from 2013 to 2018
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- Journal Article
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Determining tipping points and responses of macroinvertebrate traits to abiotic factors in support of river management
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- Journal Article
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Kitainik axioms do not characterize the class of inclusion measures based on contrapositive fuzzy implications
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- Journal Article
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CRISPR-Cas-Docker : web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins
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- Journal Article
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On the hamiltonicity of a planar graph and its vertex-deleted subgraphs
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- Journal Article
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Using random-forest multiple imputation to address bias of self-reported anthropometric measures, hypertension and hypercholesterolemia in the Belgian health interview survey
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- Journal Article
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Tight cycle spectrum gaps of cubic 3-connected toroidal graphs
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Comment on" Estimands and their Estimators for Clinical Trials Impacted by the COVID-19 Pandemic: A Report from the NISS Ingram Olkin Forum Series on Unplanned Clinical Trial Disruptions"
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- PhD Thesis
- open access
Building the Unipept Ecosystem : empowering high-throughput metaproteomics data analysis for characterizing complex microbial communities
(2023) -
Fuzzy rough nearest neighbour classification on real-life datasets
(2023) -
- Journal Article
- A1
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Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation
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- Journal Article
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LXR signaling controls homeostatic dendritic cell maturation
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Causal estimands and estimation for randomized clinical trials with intercurrent events : addressing extrapolation
(2023) -
Modeling intercellular communication from transcriptomics data by linking ligands to target genes
(2023) -
- Journal Article
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Colouring graphs with no induced six-vertex path or diamond
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Jumping over hurdles : deciphering the soil microbiome and its link to soil health
(2023) -
- Journal Article
- A1
- open access
House of Graphs 2.0 : a database of interesting graphs and more
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Algorithms for time-independent Schrödinger equations
(2023) -
- Journal Article
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Causal inference in survival analysis using longitudinal observational data : sequential trials and marginal structural models
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- Journal Article
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Evaluation of tuberculosis diagnostic test accuracy using Bayesian latent class analysis in the presence of conditional dependence between the diagnostic tests used in a community-based tuberculosis screening study
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- PhD Thesis
- open access
Causal inference methods to optimize clinical decision-making in treatment initiation based on routinely collected data
(2023) -
Topics in representation theory of the Dunkl total angular momentum algebra
(2023) -
- PhD Thesis
- open access
Improving the robustness of deep neural networks to adversarial perturbations
(2023) -
Machine learning, multi agent and cyber physical systems
Qinglin Sun, Jie Lu, Xianyi Zeng, Etienne Kerre (UGent) and Tianrui Li -
Age estimation of puppies based on the radiographically assessed development of ossification centres in the carpal and metacarpal regions
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- Journal Article
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A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis
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Exploring the microbial response as a potential bio-indicator for soil health : insights from a controlled incubator experiment
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- Journal Article
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Functions of the RIP kinase family members in the skin
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Statistical methods to guide clinical decision-making in tuberculosis
(2023) -
- Journal Article
- A1
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Adjuvant dendritic cell-based immunotherapy after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy in patients with malignant peritoneal mesothelioma : a phase II clinical trial
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- Journal Article
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Critical site percolation on the triangular lattice: from integrability to conformal partition functions
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- Journal Article
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Fusion hierarchies, T-systems and Y-systems for the dilute A2(2) loop models on a strip
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- Journal Article
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The role of loneliness on hearing ability and dementia : a novel mediation approach
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- Journal Article
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Sodium perturbs mitochondrial respiration and induces dysfunctional Tregs
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- Journal Article
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On optimal timing of antenatal corticosteroids : time to reformulate the question
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- Journal Article
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Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses
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- Journal Article
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A bispecific Clec9A-PD-L1 targeted type I interferon profoundly reshapes the tumor microenvironment towards an antitumor state
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Instrumental variable estimation of the causal hazard ratio
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- Journal Article
- A1
- open access
Generalised symmetries and bases for dunkl monogenics
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- Journal Article
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Dodona : learn to code with a virtual co-teacher that supports active learning
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- Journal Article
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Fuzzy rough nearest neighbour methods for detecting emotions, hate speech and irony
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- Journal Article
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Machine learning pipeline for predicting bone marrow edema along the sacroiliac joints on magnetic resonance imaging
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- Miscellaneous
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A Complement Atlas identifies interleukin 6 dependent alternative pathway dysregulation as a key druggable feature of COVID-19
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- Journal Article
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TESTed : an educational testing framework with language-agnostic test suites for programming exercises
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- Miscellaneous
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Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial
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Single-arm studies involving patient-reported outcome data in oncology : a literature review on current practice
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- PhD Thesis
- open access
Fuzzy rough set methods for emotion detection and sentiment analysis
(2023) -
Engaging schools to build a regional urban climate monitoring network
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Checkpoint inhibitors in combination with stereotactic body radiotherapy in patients with advanced solid tumors : the CHEERS phase 2 randomized clinical trial
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- Journal Article
- A1
- open access
Digital PCR partition classification
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- Journal Article
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Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes
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- Conference Paper
- C1
- open access
Synthetic data : can we trust statistical estimators?
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PEACE V—Salvage Treatment of OligoRecurrent nodal prostate cancer Metastases (STORM) : acute toxicity of a randomized phase 2 trial
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Secure Multi-Party Computation for Personalized Human Activity Recognition
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- Journal Article
- open access
Privacy-Preserving Fair Item Ranking
(2023) ADVANCES IN INFORMATION RETRIEVAL, ECIR 2023, PT II. In Lecture Notes in Computer Science 13981. p.188-203 -
- Journal Article
- A1
- open access
Autophagy critically controls skin inflammation and apoptosis-induced stem cell activation
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Revised conditional t-SNE : looking beyond the nearest neighbors
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The Exceptional Lie Algebra g<sub>2</sub> is Generated by Three Generators Subject to Quadruple Relations
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Metaphors of time across cultures
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- Miscellaneous
- open access
Differential detection workflows for multi-sample single-cell RNA-seq data
(2023) -
- Journal Article
- A1
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Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability
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- Journal Article
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PROMISE : effect of protein supplementation on fat-free mass preservation after bariatric surgery, a randomized double-blind placebo-controlled trial
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- Journal Article
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A parametric family of fuzzy similarity measures for intuitionistic fuzzy sets
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- Journal Article
- A2
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Topological data analysis of thoracic radiographic images shows improved radiomics-based lung tumor histology prediction
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The Use of Covariate Adjustment in Randomized Controlled Trials: An Overview
(2023)